Detailed information NTG0407522

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: GPY46_RS22385
• Genome accession: NZ_CP046776
• Coordinates: 2754753..2755742 (-)
• Length: 329 a.a.
• NCBI ID: WP_025500977.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain AM43962
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2749753..2760742

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPY46_RS22370	recA	2750302..2751345 (-)	1044	WP_025606301.1	recombinase RecA	Machinery gene
GPY46_RS22375	pncC	2751546..2752028 (-)	483	WP_029826209.1	nicotinamide-nucleotide amidase	-
GPY46_RS22380	mutS	2752113..2754674 (+)	2562	WP_025535213.1	DNA mismatch repair protein MutS	-
GPY46_RS22385	rpoS	2754753..2755742 (-)	990	WP_025500977.1	RNA polymerase sigma factor RpoS	Regulator
GPY46_RS22390	-	2755823..2756746 (-)	924	WP_005455560.1	peptidoglycan DD-metalloendopeptidase family protein	-
GPY46_RS22395	-	2756761..2757387 (-)	627	WP_005455562.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
GPY46_RS22400	surE	2757387..2758163 (-)	777	WP_025554253.1	5'/3'-nucleotidase SurE	-
GPY46_RS22405	truD	2758163..2759206 (-)	1044	WP_158128015.1	tRNA pseudouridine(13) synthase TruD	-
GPY46_RS22410	ispF	2759253..2759729 (-)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
GPY46_RS22415	ispD	2759747..2760451 (-)	705	WP_005478544.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
GPY46_RS22420	ftsB	2760453..2760734 (-)	282	WP_005455577.1	cell division protein FtsB	-

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37574.41 Da
• Isoelectric Point: 4.6096

>NTDB_id=407522 GPY46_RS22385 WP_025500977.1 2754753..2755742(-) (rpoS) [Vibrio parahaemolyticus strain AM43962]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNIEDD

Nucleotide

• Length: 990 bp

>NTDB_id=407522 GPY46_RS22385 WP_025500977.1 2754753..2755742(-) (rpoS) [Vibrio parahaemolyticus strain AM43962]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGTAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGTTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTAGAAGATGTCAGCAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAACAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGCTATGAGCCGTCTACGCTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CCCGTGAGCGTGTACGTCAAATTCAAGTGGAGGGTTTACGTCGACTTCGTGAAATCCTCATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACATCGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.533	100	0.848