Detailed information NTG0407316

Bioinformatically predicted

Overview

• Name: recA
• Type: Machinery gene
• Locus tag: GPY27_RS01960
• Genome accession: NZ_CP046761
• Coordinates: 378488..379531 (+)
• Length: 347 a.a.
• NCBI ID: WP_023623298.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain AM46865
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 373488..384531

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPY27_RS01945	rpoS	374091..375080 (+)	990	WP_005478537.1	RNA polymerase sigma factor RpoS	Regulator
GPY27_RS01950	mutS	375159..377720 (-)	2562	WP_158113711.1	DNA mismatch repair protein MutS	-
GPY27_RS01955	pncC	377805..378287 (+)	483	WP_025795578.1	nicotinamide-nucleotide amidase	-
GPY27_RS01960	recA	378488..379531 (+)	1044	WP_023623298.1	recombinase RecA	Machinery gene
GPY27_RS01965	recX	379655..380122 (+)	468	WP_005455548.1	recombination regulator RecX	-
GPY27_RS01970	alaS	380265..382847 (+)	2583	WP_140095445.1	alanine--tRNA ligase	-
GPY27_RS01975	-	383050..384237 (+)	1188	WP_005478552.1	aspartate kinase	-
GPY27_RS01980	csrA	384330..384527 (+)	198	WP_004415691.1	carbon storage regulator CsrA	-

Sequence

Protein

• Length: 347 a.a.
• Molecular weight: 37462.94 Da
• Isoelectric Point: 5.1850

>NTDB_id=407316 GPY27_RS01960 WP_023623298.1 378488..379531(+) (recA) [Vibrio parahaemolyticus strain AM46865]
MDENKQKALAAALGQIEKQFGKGSIMRLGDNRAMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIA
AAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNE
TRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKLVEKAGAWYSYNGDKIGQGKANACNYLREHPEIAKTIDT
KLREMLLSPAQPEAPTAGEKPEQEEEF

Nucleotide

• Length: 1044 bp

>NTDB_id=407316 GPY27_RS01960 WP_023623298.1 378488..379531(+) (recA) [Vibrio parahaemolyticus strain AM46865]
ATGGACGAGAACAAACAGAAAGCGCTCGCCGCTGCGCTAGGTCAAATTGAAAAGCAATTCGGTAAAGGCTCTATCATGCG
CCTCGGTGATAACCGCGCAATGGATGTAGAAACCATTTCAACGGGTTCGCTTTCTCTTGATATCGCTTTGGGTGCTGGTG
GTCTACCAATGGGTCGTATCGTTGAGATTTACGGTCCAGAATCTTCAGGTAAAACAACACTAACTCTTGAACTTATTGCT
GCTGCGCAACGTGAAGGTAAAACTTGTGCGTTTATCGATGCTGAGCACGCGTTGGATCCTGTGTACGCTAAAAAGCTTGG
TGTTGATATCGATGCACTATTGGTTTCTCAACCAGACACTGGTGAGCAAGCTCTAGAGATTTGTGATGCATTAGCTCGCT
CTGGCGCCATCGACGTAATGGTTGTTGACTCTGTTGCCGCTCTAACACCTAAAGCTGAGATCGAAGGCGAAATGGGTGAT
AGCCACATGGGTTTGCAAGCTCGTATGCTTTCTCAAGCAATGCGTAAGCTTACAGGTAACCTGAAACAGTCTAACTGTAT
GTGTATCTTCATCAACCAAATCCGTATGAAGATTGGTGTGATGTTCGGTAACCCTGAAACGACTACTGGCGGTAACGCGC
TTAAGTTTTACGCTTCTGTTCGTTTAGATATCCGTCGTACTGGCGCAATCAAAGAAGGCGACGAAGTTGTAGGTAACGAA
ACGCGTATCAAAGTGGTTAAGAACAAGATTGCAGCACCATTTAAAGAAGCAAACACGCAAATCATGTATGGCCAAGGCTT
TAACCGTGAAGGTGAGTTGATTGACTTAGGCGTGAAGCACAAGCTAGTAGAAAAAGCGGGTGCTTGGTACAGCTACAATG
GCGATAAGATTGGTCAAGGTAAAGCAAACGCTTGTAACTACCTGCGTGAGCATCCAGAAATCGCGAAAACAATCGATACC
AAACTGCGTGAAATGCTACTTTCTCCAGCTCAACCAGAAGCACCTACTGCCGGTGAGAAGCCTGAGCAAGAAGAAGAGTT
TTAA

Domains

Predicted by InterproScan.

• recA bacterial DNA recombination protein (RecA) (7-267)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recA	Vibrio cholerae strain A1552	95.745	94.813	0.908
recA	Vibrio cholerae O1 biovar El Tor strain E7946	95.745	94.813	0.908
recA	Pseudomonas stutzeri DSM 10701	72.941	97.983	0.715
recA	Acinetobacter baylyi ADP1	72.012	98.847	0.712
recA	Acinetobacter baumannii D1279779	74.695	94.524	0.706
recA	Glaesserella parasuis strain SC1401	68.103	100	0.683
recA	Neisseria gonorrhoeae MS11	66.189	100	0.666
recA	Neisseria gonorrhoeae MS11	66.189	100	0.666
recA	Neisseria gonorrhoeae strain FA1090	66.189	100	0.666
recA	Ralstonia pseudosolanacearum GMI1000	71.383	89.625	0.64
recA	Helicobacter pylori 26695	60.294	97.983	0.591
recA	Helicobacter pylori strain NCTC11637	62.08	94.236	0.585
recA	Streptococcus pneumoniae Rx1	62.848	93.084	0.585
recA	Streptococcus pneumoniae R6	62.848	93.084	0.585
recA	Streptococcus pneumoniae D39	62.848	93.084	0.585
recA	Streptococcus pneumoniae TIGR4	62.848	93.084	0.585
recA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	63.636	91.931	0.585
recA	Bacillus subtilis subsp. subtilis str. 168	62.617	92.507	0.579
recA	Streptococcus mitis NCTC 12261	61.92	93.084	0.576
recA	Streptococcus pyogenes NZ131	61.231	93.66	0.573
recA	Streptococcus mitis SK321	61.61	93.084	0.573
recA	Streptococcus mutans UA159	60.923	93.66	0.571
recA	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	61.371	92.507	0.568
recA	Riemerella anatipestifer ATCC 11845 = DSM 15868	59.215	95.389	0.565
recA	Lactococcus lactis subsp. cremoris KW2	60.681	93.084	0.565
recA	Latilactobacillus sakei subsp. sakei 23K	60.748	92.507	0.562