Detailed information NTG0407314

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: GPY27_RS01945
• Genome accession: NZ_CP046761
• Coordinates: 374091..375080 (+)
• Length: 329 a.a.
• NCBI ID: WP_005478537.1
• Uniprot ID: A8D8R0
• Organism: Vibrio parahaemolyticus strain AM46865
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 369091..380080

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPY27_RS01910	ftsB	369099..369380 (+)	282	WP_005455577.1	cell division protein FtsB	-
GPY27_RS01915	ispD	369382..370086 (+)	705	WP_005487195.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
GPY27_RS01920	ispF	370104..370580 (+)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
GPY27_RS01925	truD	370627..371670 (+)	1044	WP_158113708.1	tRNA pseudouridine(13) synthase TruD	-
GPY27_RS01930	surE	371670..372446 (+)	777	WP_005478553.1	5'/3'-nucleotidase SurE	-
GPY27_RS01935	-	372446..373072 (+)	627	WP_005455562.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
GPY27_RS01940	-	373087..374010 (+)	924	WP_005455560.1	peptidoglycan DD-metalloendopeptidase family protein	-
GPY27_RS01945	rpoS	374091..375080 (+)	990	WP_005478537.1	RNA polymerase sigma factor RpoS	Regulator
GPY27_RS01950	mutS	375159..377720 (-)	2562	WP_158113711.1	DNA mismatch repair protein MutS	-
GPY27_RS01955	pncC	377805..378287 (+)	483	WP_025795578.1	nicotinamide-nucleotide amidase	-
GPY27_RS01960	recA	378488..379531 (+)	1044	WP_023623298.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37560.38 Da
• Isoelectric Point: 4.6096

>NTDB_id=407314 GPY27_RS01945 WP_005478537.1 374091..375080(+) (rpoS) [Vibrio parahaemolyticus strain AM46865]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=407314 GPY27_RS01945 WP_005478537.1 374091..375080(+) (rpoS) [Vibrio parahaemolyticus strain AM46865]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGCTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTAGAAGATGTCAGCAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAACAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGTTATGAGCCGTCTACGCTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CCCGTGAGCGTGTACGTCAAATTCAAGTGGAGGGTTTACGTCGACTTCGTGAAATCCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTCGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: A8D8R0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.851