Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   GPA07_RS11310 Genome accession   NZ_CP046653
Coordinates   2160707..2161750 (-) Length   347 a.a.
NCBI ID   WP_008358025.1    Uniprot ID   -
Organism   Bacillus sp. ms-22     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2155707..2166750
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPA07_RS11295 (GPA07_11295) spoVS 2157300..2157560 (-) 261 WP_003211281.1 stage V sporulation protein SpoVS -
  GPA07_RS11300 (GPA07_11300) - 2157763..2158557 (-) 795 WP_008358024.1 TIGR00282 family metallophosphoesterase -
  GPA07_RS11305 (GPA07_11305) rny 2158647..2160209 (-) 1563 WP_003211958.1 ribonuclease Y -
  GPA07_RS11310 (GPA07_11310) recA 2160707..2161750 (-) 1044 WP_008358025.1 recombinase RecA Machinery gene
  GPA07_RS11315 (GPA07_11315) cinA 2161927..2163177 (-) 1251 WP_157292550.1 competence/damage-inducible protein A Machinery gene
  GPA07_RS11320 (GPA07_11320) pgsA 2163194..2163775 (-) 582 WP_071167597.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  GPA07_RS11325 (GPA07_11325) - 2163848..2164762 (-) 915 WP_071167598.1 helix-turn-helix domain-containing protein -
  GPA07_RS11330 (GPA07_11330) - 2164786..2165577 (-) 792 WP_003211480.1 DUF3388 domain-containing protein -
  GPA07_RS11335 (GPA07_11335) - 2165708..2165965 (-) 258 WP_008358034.1 DUF3243 domain-containing protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37846.00 Da        Isoelectric Point: 4.8387

>NTDB_id=406432 GPA07_RS11310 WP_008358025.1 2160707..2161750(-) (recA) [Bacillus sp. ms-22]
MSDRQAALDMALKQIEKQFGKGSIMKLGEQTDTHISTVPSGSLALDTALGIGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQQQGGQAAFIDAEHALDPVYAKKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIVVIDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDIMGNKT
RIKVVKNKVAPPFRVAEVDIMYGEGISKEGEIIDLGSELDIVQKSGAWYSYQEERLGQGRENAKQFLKENKDILLMIQEQ
IREHYGLDTNGVKPTEEEGQEELEFND

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=406432 GPA07_RS11310 WP_008358025.1 2160707..2161750(-) (recA) [Bacillus sp. ms-22]
ATGAGTGATCGTCAAGCAGCCTTAGATATGGCTCTTAAACAAATAGAAAAACAGTTTGGTAAAGGCTCTATTATGAAACT
AGGAGAACAAACAGATACACATATTTCAACAGTACCAAGTGGTTCGTTAGCACTTGATACTGCGCTTGGAATAGGTGGGT
ATCCTCGCGGCCGTATTATTGAAGTATATGGTCCAGAGAGTTCTGGTAAAACGACAGTAGCACTTCATGCAATTGCTGAG
GTTCAGCAGCAGGGAGGACAAGCTGCGTTTATCGATGCAGAACATGCGCTAGATCCGGTTTATGCTAAAAAACTAGGTGT
CAACATTGATGAGCTGCTGCTTTCTCAGCCGGATACAGGAGAACAAGCACTGGAAATTGCAGAAGCACTTGTCCGCAGTG
GTGCAGTTGATATTGTTGTCATTGACTCAGTAGCTGCTCTTGTACCAAAAGCAGAGATCGAAGGAGATATGGGAGATTCA
CACGTCGGTCTTCAAGCGCGTTTAATGTCTCAAGCCCTTCGTAAACTGTCAGGTGCCATCAACAAATCGAAAACCATTGC
GATCTTTATTAACCAAATTCGTGAAAAAGTAGGGGTTATGTTCGGTAATCCTGAAACAACACCTGGTGGGCGTGCACTGA
AGTTCTATTCGTCTGTTCGTTTAGAAGTACGCCGTGCTGAACAGCTGAAACAAGGCAACGACATTATGGGGAATAAAACG
AGAATTAAAGTCGTAAAAAACAAAGTGGCACCGCCATTCCGTGTTGCGGAAGTAGATATTATGTACGGTGAAGGAATCTC
AAAAGAGGGAGAAATCATCGACCTTGGAAGCGAACTAGATATCGTACAAAAGAGTGGTGCATGGTATTCTTATCAAGAGG
AACGTCTTGGACAAGGCCGCGAAAATGCGAAACAGTTCCTAAAAGAAAACAAAGACATCCTTCTCATGATTCAAGAGCAA
ATTAGGGAGCACTATGGCTTGGATACAAACGGTGTGAAACCAACCGAAGAAGAAGGACAAGAGGAACTGGAATTTAATGA
CTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

96.084

95.677

0.919
  recA Latilactobacillus sakei subsp. sakei 23K

75.385

93.66

0.706
  recA Streptococcus pneumoniae D39

69.091

95.101

0.657
  recA Streptococcus mitis NCTC 12261

69.091

95.101

0.657
  recA Streptococcus pneumoniae Rx1

69.091

95.101

0.657
  recA Streptococcus pneumoniae R6

69.091

95.101

0.657
  recA Streptococcus pneumoniae TIGR4

69.091

95.101

0.657
  recA Streptococcus mitis SK321

68.788

95.101

0.654
  recA Streptococcus mutans UA159

68.693

94.813

0.651
  recA Streptococcus pyogenes NZ131

68.293

94.524

0.646
  recA Lactococcus lactis subsp. cremoris KW2

66.97

95.101

0.637
  recA Helicobacter pylori strain NCTC11637

62.974

98.847

0.622
  recA Helicobacter pylori 26695

62.974

98.847

0.622
  recA Neisseria gonorrhoeae strain FA1090

63.798

97.118

0.62
  recA Neisseria gonorrhoeae MS11

63.798

97.118

0.62
  recA Neisseria gonorrhoeae MS11

63.798

97.118

0.62
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.353

97.983

0.611
  recA Ralstonia pseudosolanacearum GMI1000

64.329

94.524

0.608
  recA Glaesserella parasuis strain SC1401

61.471

97.983

0.602
  recA Acinetobacter baumannii D1279779

61.111

98.559

0.602
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.486

92.507

0.597
  recA Vibrio cholerae strain A1552

64.486

92.507

0.597
  recA Acinetobacter baylyi ADP1

60.588

97.983

0.594
  recA Pseudomonas stutzeri DSM 10701

61.261

95.965

0.588
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.385

94.236

0.588
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.062

93.084

0.559

Multiple sequence alignment