Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   GPA07_RS11315 Genome accession   NZ_CP046653
Coordinates   2161927..2163177 (-) Length   416 a.a.
NCBI ID   WP_157292550.1    Uniprot ID   -
Organism   Bacillus sp. ms-22     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2156927..2168177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPA07_RS11295 (GPA07_11295) spoVS 2157300..2157560 (-) 261 WP_003211281.1 stage V sporulation protein SpoVS -
  GPA07_RS11300 (GPA07_11300) - 2157763..2158557 (-) 795 WP_008358024.1 TIGR00282 family metallophosphoesterase -
  GPA07_RS11305 (GPA07_11305) rny 2158647..2160209 (-) 1563 WP_003211958.1 ribonuclease Y -
  GPA07_RS11310 (GPA07_11310) recA 2160707..2161750 (-) 1044 WP_008358025.1 recombinase RecA Machinery gene
  GPA07_RS11315 (GPA07_11315) cinA 2161927..2163177 (-) 1251 WP_157292550.1 competence/damage-inducible protein A Machinery gene
  GPA07_RS11320 (GPA07_11320) pgsA 2163194..2163775 (-) 582 WP_071167597.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  GPA07_RS11325 (GPA07_11325) - 2163848..2164762 (-) 915 WP_071167598.1 helix-turn-helix domain-containing protein -
  GPA07_RS11330 (GPA07_11330) - 2164786..2165577 (-) 792 WP_003211480.1 DUF3388 domain-containing protein -
  GPA07_RS11335 (GPA07_11335) - 2165708..2165965 (-) 258 WP_008358034.1 DUF3243 domain-containing protein -
  GPA07_RS11340 (GPA07_11340) - 2166039..2166767 (-) 729 WP_008358036.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45667.81 Da        Isoelectric Point: 4.9168

>NTDB_id=406433 GPA07_RS11315 WP_157292550.1 2161927..2163177(-) (cinA) [Bacillus sp. ms-22]
MKSERKAEIIAVGSELLLGQITNTNAQFISKQLAEMGVNVYYHTAVGDNPERLKQAIQVAQERSNFIIFSGGLGPTKDDL
TKETIANTLGKELVLNEEAFESIQDYFRKTGRDMSPNNRKQALVLKGSDVLANRFGMAPGMFIQEGDTFYILLPGPPSEL
HPMFENEAKPLISEKLGLKEKIVSVVLRFFGIGESQLETDLEDLIDAQTNPTIAPLAGDGEVTLRLTAKHEDEQETERLL
KETEAQILERVGEYFYGYGDTSLVREASKALHEQGKTVAAAESLTGGMFSEWLTDLEGASSILRGSVVCYTNQVKQQVLG
CREETLSSHGAVSKECALELAEGVRKLTGSDIGISFTGVAGPDTQEGQPVGKVFIGLSTKDRTDVFEWMFTGSRSGIRKR
AVKYGLHHLLKLLKES

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=406433 GPA07_RS11315 WP_157292550.1 2161927..2163177(-) (cinA) [Bacillus sp. ms-22]
TTGAAGTCAGAGAGAAAAGCAGAAATTATTGCAGTCGGTTCTGAACTTTTGCTAGGGCAAATTACGAATACGAATGCACA
ATTTATCAGCAAACAGCTAGCTGAAATGGGTGTGAATGTTTATTACCACACAGCAGTTGGTGACAATCCAGAGCGTTTAA
AACAGGCCATTCAAGTGGCGCAGGAAAGATCTAATTTTATTATCTTCTCAGGTGGTCTTGGACCAACTAAAGATGATTTA
ACAAAAGAAACCATTGCAAATACGCTCGGCAAAGAGCTTGTACTAAATGAAGAAGCATTTGAATCAATCCAAGATTACTT
CAGAAAAACCGGACGTGATATGTCTCCGAACAACCGGAAGCAGGCACTCGTTTTAAAGGGTTCTGATGTTCTTGCCAATC
GCTTCGGAATGGCACCAGGTATGTTTATTCAAGAGGGAGATACGTTTTATATCCTGCTTCCTGGACCGCCAAGTGAACTA
CATCCGATGTTTGAAAACGAAGCAAAGCCGCTTATTTCTGAGAAACTCGGCTTGAAGGAAAAAATTGTGTCTGTCGTCCT
GCGTTTCTTCGGCATCGGTGAATCTCAGCTTGAAACAGACCTTGAAGATTTAATTGATGCTCAGACCAACCCAACGATTG
CACCGCTGGCAGGTGACGGGGAAGTGACCTTGAGGCTTACAGCCAAGCATGAGGATGAACAAGAAACGGAGCGTCTGTTA
AAAGAAACAGAAGCACAAATTTTAGAGCGGGTTGGCGAGTACTTCTACGGATATGGTGATACATCGCTTGTCCGTGAAGC
GTCCAAAGCATTGCACGAACAAGGGAAAACAGTAGCAGCGGCTGAAAGCCTGACTGGCGGCATGTTTTCTGAATGGCTGA
CCGATCTTGAAGGCGCATCGTCGATTTTGCGCGGCAGTGTCGTTTGTTACACAAATCAAGTCAAGCAGCAGGTGCTCGGC
TGCCGGGAGGAAACGTTATCTTCTCATGGTGCTGTCAGCAAAGAGTGTGCTTTAGAGCTCGCTGAAGGGGTTAGAAAGCT
GACCGGAAGTGATATTGGTATTAGCTTTACGGGTGTAGCAGGCCCTGATACCCAAGAAGGACAGCCTGTTGGAAAAGTGT
TCATTGGGCTATCCACAAAAGATCGGACAGATGTGTTTGAGTGGATGTTTACAGGCAGTCGATCAGGTATTCGCAAGCGT
GCTGTGAAATATGGTCTGCATCACCTCCTCAAATTATTAAAAGAGAGTTAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Competence-damaged protein (CinA)

(262-412)

Damage-inducible protein CinA KH domain (CinA_KH)

(186-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

75.422

99.76

0.752
  cinA Streptococcus mitis SK321

47.608

100

0.478
  cinA Streptococcus mitis NCTC 12261

47.368

100

0.476
  cinA Streptococcus pneumoniae TIGR4

47.368

100

0.476
  cinA Streptococcus pneumoniae Rx1

47.129

100

0.474
  cinA Streptococcus pneumoniae R6

47.129

100

0.474
  cinA Streptococcus pneumoniae D39

46.89

100

0.471
  cinA Streptococcus mutans UA159

48.157

97.837

0.471
  cinA Streptococcus suis isolate S10

43.122

90.865

0.392

Multiple sequence alignment