Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   GO596_RS03485 Genome accession   NZ_CP046628
Coordinates   683835..684989 (+) Length   384 a.a.
NCBI ID   WP_004233517.1    Uniprot ID   A0A1G9LPJ2
Organism   Streptococcus equinus strain CNU 77-23     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 678835..689989
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO596_RS03465 (GO596_03465) ruvA 679907..680500 (+) 594 WP_024344431.1 Holliday junction branch migration protein RuvA -
  GO596_RS03470 (GO596_03470) - 680530..681087 (+) 558 WP_162496024.1 DNA-3-methyladenine glycosylase I -
  GO596_RS03475 (GO596_03475) - 681210..682412 (+) 1203 WP_157339202.1 MFS transporter -
  GO596_RS03480 (GO596_03480) cinA 682526..683785 (+) 1260 WP_157339203.1 competence/damage-inducible protein A Machinery gene
  GO596_RS03485 (GO596_03485) recA 683835..684989 (+) 1155 WP_004233517.1 recombinase RecA Machinery gene
  GO596_RS03490 (GO596_03490) spx 685187..685585 (+) 399 WP_004233512.1 transcriptional regulator Spx -
  GO596_RS03495 (GO596_03495) - 685818..686087 (+) 270 WP_004233510.1 IreB family regulatory phosphoprotein -
  GO596_RS03500 (GO596_03500) ruvX 686084..686503 (+) 420 WP_004233508.1 Holliday junction resolvase RuvX -
  GO596_RS03505 (GO596_03505) - 686536..686853 (+) 318 WP_006531413.1 DUF1292 domain-containing protein -
  GO596_RS09520 - 686952..687080 (+) 129 WP_267878376.1 hypothetical protein -
  GO596_RS03510 (GO596_03510) - 687123..688700 (+) 1578 WP_157339204.1 DUF2079 domain-containing protein -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 41151.66 Da        Isoelectric Point: 4.9093

>NTDB_id=406235 GO596_RS03485 WP_004233517.1 683835..684989(+) (recA) [Streptococcus equinus strain CNU 77-23]
MAKKTKKTEAITKKFGDERKKALDDALKLIEKDFGKGAVMRLGERAEQKVQVMSTGSLALDIALGAGGYPKGRIIEIYGP
ESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVA
ALVPRAEIDGDIGDNHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYSSVRLDVRG
NTQIKGTGDQKDSNIGKETKIKVVKNKVAPPFKTAEVEIMYGEGISRTGELIKIASDLDIINKAGAWFSYNGEKIGQGSE
NAKKYLADHPDVFDEIDHKVRVHYGLVEETEDEKAANAADESAATSEKADEVVLDLDDAIEIEE

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=406235 GO596_RS03485 WP_004233517.1 683835..684989(+) (recA) [Streptococcus equinus strain CNU 77-23]
TTGGCTAAAAAGACAAAGAAAACAGAAGCTATCACGAAGAAATTCGGTGATGAGCGTAAAAAAGCACTTGATGATGCTTT
GAAATTAATCGAAAAAGATTTTGGTAAAGGAGCGGTCATGCGCCTTGGTGAGCGTGCTGAACAAAAAGTTCAAGTCATGA
GTACTGGTAGTCTGGCGCTTGATATTGCACTAGGTGCTGGTGGGTACCCTAAAGGACGTATTATTGAAATCTATGGTCCT
GAAAGTTCAGGTAAAACAACAGTAGCTCTTCATGCCGTGGCACAAGCACAAAAAGAAGGTGGTATTGCAGCCTTTATCGA
TGCCGAACATGCTCTTGACCCAGCTTATGCAGCAGCTCTTGGTGTTAATATCGATGAACTTCTTTTGTCACAACCTGACT
CAGGTGAACAAGGTCTTGAAATTGCAGGTAAATTGATTGATTCTGGTGCTGTTGACCTTGTTGTTGTCGACTCTGTTGCC
GCTCTTGTACCTCGTGCAGAAATTGATGGTGACATTGGTGATAACCACGTTGGTTTGCAAGCTCGTATGATGAGTCAAGC
TATGCGTAAACTCTCAGCATCTATCAACAAAACAAAAACAATCGCTATCTTTATCAACCAATTGCGTGAAAAAGTTGGTG
TCATGTTTGGTAATCCAGAAACAACACCTGGTGGACGTGCTCTTAAATTCTATTCATCAGTTCGTCTTGATGTTCGTGGA
AATACACAAATTAAAGGTACTGGTGACCAAAAAGATAGCAACATCGGTAAAGAAACTAAAATCAAAGTTGTTAAAAACAA
AGTTGCTCCACCGTTTAAAACTGCTGAAGTGGAAATCATGTACGGTGAAGGAATTTCACGTACAGGTGAGTTGATTAAAA
TCGCTAGTGATTTGGATATCATCAACAAAGCTGGTGCATGGTTCTCTTACAATGGTGAGAAAATTGGTCAAGGTTCTGAA
AATGCTAAGAAATATTTGGCAGATCACCCAGATGTCTTTGATGAAATTGATCACAAAGTTCGTGTTCATTATGGACTTGT
TGAAGAAACTGAAGATGAAAAAGCAGCAAATGCTGCTGACGAATCAGCTGCAACTTCTGAAAAAGCAGATGAAGTTGTTC
TTGACCTAGACGATGCGATTGAAATCGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1G9LPJ2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus pyogenes NZ131

89.323

100

0.893
  recA Streptococcus mutans UA159

88.052

100

0.883
  recA Streptococcus mitis NCTC 12261

85.64

99.74

0.854
  recA Streptococcus mitis SK321

85.64

99.74

0.854
  recA Streptococcus pneumoniae D39

84.935

100

0.852
  recA Streptococcus pneumoniae Rx1

84.935

100

0.852
  recA Streptococcus pneumoniae R6

84.935

100

0.852
  recA Streptococcus pneumoniae TIGR4

84.935

100

0.852
  recA Lactococcus lactis subsp. cremoris KW2

78

91.146

0.711
  recA Latilactobacillus sakei subsp. sakei 23K

69.122

91.927

0.635
  recA Bacillus subtilis subsp. subtilis str. 168

68.997

85.677

0.591
  recA Neisseria gonorrhoeae strain FA1090

60.286

91.146

0.549
  recA Neisseria gonorrhoeae MS11

60.286

91.146

0.549
  recA Neisseria gonorrhoeae MS11

60.286

91.146

0.549
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.767

88.281

0.536
  recA Acinetobacter baylyi ADP1

57.465

92.448

0.531
  recA Glaesserella parasuis strain SC1401

59.706

88.542

0.529
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.229

84.115

0.523
  recA Acinetobacter baumannii D1279779

61.35

84.896

0.521
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.923

84.635

0.516
  recA Vibrio cholerae strain A1552

60.923

84.635

0.516
  recA Pseudomonas stutzeri DSM 10701

56.772

90.365

0.513
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.912

86.198

0.508
  recA Helicobacter pylori 26695

58.084

86.979

0.505
  recA Helicobacter pylori strain NCTC11637

58.084

86.979

0.505
  recA Ralstonia pseudosolanacearum GMI1000

59.306

82.552

0.49

Multiple sequence alignment