Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   GO596_RS03480 Genome accession   NZ_CP046628
Coordinates   682526..683785 (+) Length   419 a.a.
NCBI ID   WP_157339203.1    Uniprot ID   -
Organism   Streptococcus equinus strain CNU 77-23     
Function   require for competence (predicted from homology)   
Unclear

Genomic Context

Location: 677526..688785
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO596_RS03460 (GO596_03460) mutL 677963..679906 (+) 1944 WP_027968297.1 DNA mismatch repair endonuclease MutL -
  GO596_RS03465 (GO596_03465) ruvA 679907..680500 (+) 594 WP_024344431.1 Holliday junction branch migration protein RuvA -
  GO596_RS03470 (GO596_03470) - 680530..681087 (+) 558 WP_162496024.1 DNA-3-methyladenine glycosylase I -
  GO596_RS03475 (GO596_03475) - 681210..682412 (+) 1203 WP_157339202.1 MFS transporter -
  GO596_RS03480 (GO596_03480) cinA 682526..683785 (+) 1260 WP_157339203.1 competence/damage-inducible protein A Machinery gene
  GO596_RS03485 (GO596_03485) recA 683835..684989 (+) 1155 WP_004233517.1 recombinase RecA Machinery gene
  GO596_RS03490 (GO596_03490) spx 685187..685585 (+) 399 WP_004233512.1 transcriptional regulator Spx -
  GO596_RS03495 (GO596_03495) - 685818..686087 (+) 270 WP_004233510.1 IreB family regulatory phosphoprotein -
  GO596_RS03500 (GO596_03500) ruvX 686084..686503 (+) 420 WP_004233508.1 Holliday junction resolvase RuvX -
  GO596_RS03505 (GO596_03505) - 686536..686853 (+) 318 WP_006531413.1 DUF1292 domain-containing protein -
  GO596_RS09520 - 686952..687080 (+) 129 WP_267878376.1 hypothetical protein -
  GO596_RS03510 (GO596_03510) - 687123..688700 (+) 1578 WP_157339204.1 DUF2079 domain-containing protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45657.06 Da        Isoelectric Point: 4.9851

>NTDB_id=406234 GO596_RS03480 WP_157339203.1 682526..683785(+) (cinA) [Streptococcus equinus strain CNU 77-23]
MKAEIIAVGTEILTGQITNTNAQFISEEFAKLGIDVFFQTAVGDNEERLLSIIDLASKRSDLVVLCGGLGPTEDDLTKQT
LAKYLGRNLVFDEQASKRLDEFFATRPQFTRTANNERQAQLIEGSTPLQNSTGLAVGGVLEVDGVTYVVLPGPPSELKPM
VWDYLVPLLSSDHKQLYSRVLRFFGIGESQLVTVLSDLIENQTDPTIAPYAKTGEVTLRLSTKADDLETAKAKLDELEHK
ILAKKTLNSIPLENLLYGYGDDNSMARVVFDLLKQKHKTITAAESLTAGLFQSSIADFPGSSAVFNGGFVTYSIEEKAKM
LQIPLKDLQEHGVVSHFTAEKMAEQSRLLTDADFGIGLTGVAGPDGLEGHPAGTVFIGIATKEKVHSIRVVIGGRSRSDV
RHIACLYAFNLVRQALLQD

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=406234 GO596_RS03480 WP_157339203.1 682526..683785(+) (cinA) [Streptococcus equinus strain CNU 77-23]
ATGAAAGCTGAAATCATTGCTGTTGGAACAGAGATTTTAACAGGACAAATCACAAATACGAATGCACAATTTATATCAGA
GGAATTTGCTAAGTTAGGGATTGATGTCTTTTTCCAAACGGCAGTTGGGGACAATGAAGAACGTCTGCTGTCTATCATTG
ATTTGGCAAGTAAGCGCAGTGATTTAGTTGTTCTTTGCGGTGGTTTAGGACCAACCGAAGATGATTTGACAAAACAAACT
TTGGCAAAATATCTAGGACGTAACTTGGTTTTTGATGAACAGGCAAGTAAACGTTTGGATGAATTCTTTGCGACACGTCC
GCAATTTACAAGAACAGCTAACAATGAACGTCAGGCTCAATTGATTGAGGGGTCAACACCTCTTCAAAATAGTACGGGAC
TTGCTGTAGGTGGTGTTCTGGAAGTTGATGGTGTTACTTATGTCGTTCTTCCTGGACCACCAAGTGAATTGAAGCCTATG
GTTTGGGACTATTTAGTGCCATTGCTATCTAGTGACCACAAGCAATTGTATTCACGTGTCTTACGTTTCTTTGGTATCGG
GGAAAGTCAGTTGGTAACAGTTTTATCAGATTTGATTGAAAATCAAACAGACCCAACAATCGCTCCGTATGCCAAAACAG
GTGAAGTGACACTTAGATTGTCAACGAAAGCTGATGACCTTGAAACAGCTAAGGCTAAGTTGGATGAGCTTGAGCATAAG
ATTCTTGCTAAGAAGACTTTAAATAGCATTCCGCTTGAAAATTTGCTTTATGGATATGGTGATGATAATAGTATGGCGCG
TGTTGTTTTTGATTTACTTAAGCAAAAACATAAGACTATTACGGCTGCAGAAAGTTTGACAGCTGGTCTGTTTCAATCAA
GTATTGCTGATTTTCCAGGCTCTTCAGCAGTTTTTAATGGTGGTTTTGTGACTTATAGCATTGAAGAAAAGGCAAAAATG
CTTCAAATTCCTTTAAAAGATTTACAAGAACATGGGGTTGTGAGTCATTTTACAGCTGAAAAAATGGCTGAGCAGTCACG
ATTGCTGACAGACGCTGATTTTGGAATTGGCTTAACAGGAGTTGCTGGTCCAGATGGTCTAGAAGGTCATCCAGCGGGAA
CAGTTTTCATAGGTATTGCTACAAAAGAAAAAGTTCATTCTATCCGTGTTGTTATAGGTGGACGAAGCCGTTCAGATGTG
CGTCATATTGCATGTTTGTATGCTTTTAACTTAGTACGTCAAGCTTTATTACAAGACTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(178-241)

Competence-damaged protein (CinA)

(263-415)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mutans UA159

71.942

99.523

0.716
  cinA Streptococcus mitis SK321

71.122

100

0.711
  cinA Streptococcus mitis NCTC 12261

70.406

100

0.704
  cinA Streptococcus pneumoniae Rx1

69.212

100

0.692
  cinA Streptococcus pneumoniae TIGR4

69.212

100

0.692
  cinA Streptococcus pneumoniae R6

69.212

100

0.692
  cinA Streptococcus pneumoniae D39

68.974

100

0.69
  cinA Streptococcus suis isolate S10

53.606

99.284

0.532
  cinA Bacillus subtilis subsp. subtilis str. 168

45.735

100

0.461

Multiple sequence alignment