Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   GOM46_RS07805 Genome accession   NZ_CP046525
Coordinates   1590921..1592069 (-) Length   382 a.a.
NCBI ID   WP_006149620.1    Uniprot ID   F5VXM8
Organism   Streptococcus infantis strain SO     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1585921..1597069
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM46_RS07780 (GOM46_07725) - 1586641..1587102 (-) 462 WP_235083521.1 MarR family winged helix-turn-helix transcriptional regulator -
  GOM46_RS07785 (GOM46_07730) - 1587312..1587986 (+) 675 WP_235083522.1 hypothetical protein -
  GOM46_RS07790 (GOM46_07735) - 1588031..1588747 (-) 717 WP_006146163.1 YebC/PmpR family DNA-binding transcriptional regulator -
  GOM46_RS07795 (GOM46_07740) - 1588844..1590214 (-) 1371 WP_235083523.1 MATE family efflux transporter -
  GOM46_RS07800 (GOM46_07745) - 1590323..1590877 (+) 555 WP_235083524.1 GNAT family N-acetyltransferase -
  GOM46_RS07805 (GOM46_07750) recA 1590921..1592069 (-) 1149 WP_006149620.1 recombinase RecA Machinery gene
  GOM46_RS07810 (GOM46_07755) cinA 1592124..1593380 (-) 1257 WP_006149651.1 competence/damage-inducible protein A Machinery gene
  GOM46_RS07815 (GOM46_07760) brpA 1593457..1594533 (-) 1077 WP_006149644.1 biofilm formation/cell division transcriptional regulator BrpA -
  GOM46_RS07820 (GOM46_07765) - 1594538..1595059 (-) 522 WP_006149646.1 GNAT family N-acetyltransferase -
  GOM46_RS07825 (GOM46_07770) tsaE 1595049..1595492 (-) 444 WP_235083525.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  GOM46_RS07830 (GOM46_07775) - 1595582..1597003 (-) 1422 WP_235083526.1 NCS2 family permease -

Sequence

Protein


Download         Length: 382 a.a.        Molecular weight: 40912.52 Da        Isoelectric Point: 4.9619

>NTDB_id=405090 GOM46_RS07805 WP_006149620.1 1590921..1592069(-) (recA) [Streptococcus infantis strain SO]
MAKKPTKKLDEIGKKFGADREKALNDALKLIEKDFGKGSIMRLGERAEQKVQVMSSGSLALDIALGSGGYPKGRIIEIYG
PESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVIDSV
AALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVR
GSTQIKGTGDQKDTNVGKETKIKVVKNKVAPPFKEALVEIMYGEGISRTGELLKIASDLDIIQKAGAWYSYKGEKIGQGS
ENAKKYLADHPEIFDEIDHQVRVQYGLIEEEEGSKASSATETSSNQEVTLDLGDALEIEIEE

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=405090 GOM46_RS07805 WP_006149620.1 1590921..1592069(-) (recA) [Streptococcus infantis strain SO]
ATGGCGAAAAAACCAACAAAAAAATTAGATGAAATTGGGAAAAAATTTGGAGCTGATCGTGAAAAAGCTTTGAATGATGC
GCTTAAATTGATTGAAAAAGACTTCGGTAAGGGTTCAATCATGCGCTTGGGTGAACGCGCAGAGCAAAAAGTACAAGTGA
TGAGTTCAGGCTCTTTGGCTCTTGATATTGCACTTGGTTCAGGTGGTTATCCAAAGGGACGTATCATTGAAATCTACGGT
CCAGAATCATCAGGTAAGACAACAGTAGCCCTTCATGCTGTAGCACAAGCACAAAAAGAAGGTGGAATTGCAGCCTTTAT
CGATGCGGAACACGCGCTCGATCCAGCCTATGCAGCAGCTCTTGGAGTGAATATTGATGAATTGCTCTTGTCACAACCAG
ACTCAGGTGAGCAAGGTCTTGAAATTGCAGGGAAATTGATTGACTCAGGTGCAGTTGACCTTGTCGTTATTGACTCGGTT
GCAGCTCTTGTACCTCGTGCGGAAATCGATGGGGATATCGGAGATAGCCACGTTGGTCTTCAAGCTCGTATGATGAGCCA
GGCGATGCGTAAACTTGGTGCTTCTATCAACAAGACAAAAACAATTGCTATCTTCATCAACCAGTTGCGTGAAAAAGTTG
GAGTTATGTTTGGTAATCCAGAAACAACTCCTGGTGGACGTGCCCTTAAATTCTATGCTTCAGTTCGTTTAGACGTTCGT
GGAAGCACACAAATTAAGGGAACTGGCGACCAAAAAGATACTAACGTCGGTAAAGAAACTAAGATTAAAGTTGTGAAAAA
CAAGGTTGCTCCACCGTTCAAAGAAGCTCTTGTTGAAATCATGTACGGGGAAGGTATTTCTAGAACTGGTGAACTCTTGA
AGATTGCTAGTGATTTGGATATCATCCAAAAAGCAGGTGCTTGGTACTCATACAAGGGTGAAAAAATCGGACAAGGTTCT
GAAAATGCGAAGAAATACTTGGCAGATCATCCAGAAATCTTTGATGAAATTGACCACCAAGTTCGTGTTCAATATGGTTT
GATCGAAGAGGAAGAAGGCTCTAAAGCAAGTTCAGCAACAGAAACAAGTTCTAACCAAGAAGTGACTCTTGATTTGGGCG
ATGCTCTTGAAATCGAAATTGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F5VXM8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mitis NCTC 12261

93.247

100

0.94
  recA Streptococcus mitis SK321

92.468

100

0.932
  recA Streptococcus pneumoniae R6

90.231

100

0.919
  recA Streptococcus pneumoniae TIGR4

90.231

100

0.919
  recA Streptococcus pneumoniae D39

90.231

100

0.919
  recA Streptococcus pneumoniae Rx1

90.231

100

0.919
  recA Streptococcus pyogenes NZ131

86.016

99.215

0.853
  recA Streptococcus mutans UA159

84.856

100

0.851
  recA Lactococcus lactis subsp. cremoris KW2

78.187

92.408

0.723
  recA Latilactobacillus sakei subsp. sakei 23K

69.909

86.126

0.602
  recA Bacillus subtilis subsp. subtilis str. 168

68.788

86.387

0.594
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.158

84.555

0.534
  recA Neisseria gonorrhoeae MS11

61.212

86.387

0.529
  recA Neisseria gonorrhoeae MS11

61.212

86.387

0.529
  recA Neisseria gonorrhoeae strain FA1090

61.212

86.387

0.529
  recA Acinetobacter baumannii D1279779

61.963

85.34

0.529
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.585

85.864

0.529
  recA Vibrio cholerae strain A1552

62.037

84.817

0.526
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.037

84.817

0.526
  recA Glaesserella parasuis strain SC1401

62.229

84.555

0.526
  recA Acinetobacter baylyi ADP1

61.35

85.34

0.524
  recA Pseudomonas stutzeri DSM 10701

56

91.623

0.513
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.182

86.387

0.503
  recA Ralstonia pseudosolanacearum GMI1000

60.252

82.984

0.5
  recA Helicobacter pylori strain NCTC11637

57.057

87.173

0.497
  recA Helicobacter pylori 26695

57.057

87.173

0.497

Multiple sequence alignment