Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   GOM46_RS07810 Genome accession   NZ_CP046525
Coordinates   1592124..1593380 (-) Length   418 a.a.
NCBI ID   WP_006149651.1    Uniprot ID   -
Organism   Streptococcus infantis strain SO     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1587124..1598380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM46_RS07785 (GOM46_07730) - 1587312..1587986 (+) 675 WP_235083522.1 hypothetical protein -
  GOM46_RS07790 (GOM46_07735) - 1588031..1588747 (-) 717 WP_006146163.1 YebC/PmpR family DNA-binding transcriptional regulator -
  GOM46_RS07795 (GOM46_07740) - 1588844..1590214 (-) 1371 WP_235083523.1 MATE family efflux transporter -
  GOM46_RS07800 (GOM46_07745) - 1590323..1590877 (+) 555 WP_235083524.1 GNAT family N-acetyltransferase -
  GOM46_RS07805 (GOM46_07750) recA 1590921..1592069 (-) 1149 WP_006149620.1 recombinase RecA Machinery gene
  GOM46_RS07810 (GOM46_07755) cinA 1592124..1593380 (-) 1257 WP_006149651.1 competence/damage-inducible protein A Machinery gene
  GOM46_RS07815 (GOM46_07760) brpA 1593457..1594533 (-) 1077 WP_006149644.1 biofilm formation/cell division transcriptional regulator BrpA -
  GOM46_RS07820 (GOM46_07765) - 1594538..1595059 (-) 522 WP_006149646.1 GNAT family N-acetyltransferase -
  GOM46_RS07825 (GOM46_07770) tsaE 1595049..1595492 (-) 444 WP_235083525.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  GOM46_RS07830 (GOM46_07775) - 1595582..1597003 (-) 1422 WP_235083526.1 NCS2 family permease -
  GOM46_RS07835 (GOM46_07780) - 1597197..1598009 (+) 813 WP_235083527.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 45042.39 Da        Isoelectric Point: 4.6805

>NTDB_id=405091 GOM46_RS07810 WP_006149651.1 1592124..1593380(-) (cinA) [Streptococcus infantis strain SO]
MKAEIIAVGTEILTGQIVNTNAQFLSEKLAEIGVDVYFQTAVGDNETRLISLLEIAQKRSNLVILTGGLGPTEDDLTKQT
LAQFLGRHLTFDAQAQAKLDDFFAHRPDYARTPNNERQAQIVEGSIPLSNETGLAVGGMIEVDGVTYVVLPGPPSELKPM
VLNELLPRLTTGAKLYSRVLRFFGIGESQLVTILSDLIEEQTDPTIAPYAKTGEVTLRLSTKATSQDEAQKALDNLEEKI
LARQTFEGVALKDICYGYGEEASLASVVVEELKKKKQTITAAESLTAGLFQATLANFSGASTIFKGGFVTYSLEEKAKML
DIPKVELEEYGVVSAFAAEKMAEQARLKTQSDFGISLTGVAGPDSLEGHPAGTVFIGLSQASGTEVIQVNIAGRSRADVR
KIAVMHAFNLVRKALLSD

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=405091 GOM46_RS07810 WP_006149651.1 1592124..1593380(-) (cinA) [Streptococcus infantis strain SO]
ATGAAAGCGGAAATAATAGCTGTTGGGACAGAAATTCTAACTGGTCAAATTGTCAATACCAATGCTCAGTTTTTGTCTGA
AAAGTTAGCTGAAATCGGAGTCGATGTTTACTTCCAGACGGCCGTGGGAGACAATGAAACTCGACTCATATCCCTGTTGG
AGATTGCTCAGAAACGTAGTAATCTGGTTATCTTAACGGGAGGATTGGGGCCGACAGAGGATGACTTGACCAAACAAACA
TTGGCTCAATTTCTAGGGCGTCATTTGACTTTTGATGCTCAAGCACAGGCTAAACTGGATGATTTCTTTGCTCATCGCCC
AGACTATGCTCGAACTCCAAATAATGAACGCCAAGCTCAAATTGTTGAGGGGTCAATCCCACTCTCAAATGAAACAGGAC
TAGCAGTTGGTGGTATGATTGAGGTAGATGGCGTGACTTATGTTGTCCTACCAGGTCCGCCAAGTGAACTGAAACCAATG
GTTTTAAATGAGCTACTACCAAGATTGACAACAGGAGCTAAGTTGTACTCACGTGTGCTACGTTTCTTTGGCATTGGTGA
GAGCCAGCTAGTGACGATTTTATCAGATTTGATTGAAGAGCAGACGGATCCAACCATAGCACCGTATGCAAAAACGGGAG
AGGTGACTCTGCGCTTGTCAACCAAGGCCACTAGTCAAGACGAGGCTCAAAAGGCCTTAGATAATCTGGAGGAAAAGATC
CTTGCACGTCAGACCTTTGAAGGGGTTGCTTTAAAGGATATCTGCTATGGTTATGGCGAAGAAGCGAGTCTAGCCAGCGT
AGTTGTTGAGGAGTTGAAAAAGAAAAAGCAAACCATCACAGCTGCAGAAAGTTTAACAGCAGGGCTTTTCCAAGCGACTT
TGGCAAACTTTTCGGGAGCATCAACAATCTTTAAAGGTGGTTTTGTCACTTATAGCCTGGAAGAAAAAGCTAAGATGTTA
GACATTCCAAAAGTAGAGTTGGAAGAATATGGAGTCGTTTCAGCATTTGCTGCGGAAAAAATGGCTGAGCAGGCACGCCT
CAAAACCCAGTCAGATTTTGGGATTAGCTTGACAGGAGTAGCTGGTCCGGATAGCCTAGAAGGGCATCCAGCAGGGACAG
TTTTCATCGGCCTATCTCAAGCATCAGGTACCGAAGTCATTCAAGTCAATATAGCTGGAAGAAGCCGAGCGGATGTTCGT
AAGATTGCAGTTATGCATGCGTTTAACTTAGTTCGCAAAGCTTTATTAAGTGACTGA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(177-243)

Competence-damaged protein (CinA)

(262-414)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

85.407

100

0.854
  cinA Streptococcus mitis NCTC 12261

84.211

100

0.842
  cinA Streptococcus pneumoniae TIGR4

83.971

100

0.84
  cinA Streptococcus pneumoniae Rx1

83.732

100

0.837
  cinA Streptococcus pneumoniae R6

83.732

100

0.837
  cinA Streptococcus pneumoniae D39

83.493

100

0.835
  cinA Streptococcus mutans UA159

72.727

100

0.727
  cinA Streptococcus suis isolate S10

56.01

99.522

0.557
  cinA Bacillus subtilis subsp. subtilis str. 168

47.368

100

0.474

Multiple sequence alignment