Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   GMB29_RS17040 Genome accession   NZ_CP046266
Coordinates   3561049..3562089 (-) Length   346 a.a.
NCBI ID   WP_136351172.1    Uniprot ID   A0A4S4CAR0
Organism   Metabacillus sediminilitoris strain DSL-17     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3556049..3567089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GMB29_RS17020 (GMB29_17020) - 3556130..3557053 (-) 924 WP_136351169.1 dipeptidase -
  GMB29_RS17025 (GMB29_17025) spoVS 3557292..3557552 (-) 261 WP_066231967.1 stage V sporulation protein SpoVS -
  GMB29_RS17030 (GMB29_17030) - 3557826..3558620 (-) 795 WP_136351170.1 TIGR00282 family metallophosphoesterase -
  GMB29_RS17035 (GMB29_17035) rny 3558954..3560516 (-) 1563 WP_406600274.1 ribonuclease Y -
  GMB29_RS17040 (GMB29_17040) recA 3561049..3562089 (-) 1041 WP_136351172.1 recombinase RecA Machinery gene
  GMB29_RS17045 (GMB29_17045) cinA 3562373..3563623 (-) 1251 WP_136351173.1 competence/damage-inducible protein A Machinery gene
  GMB29_RS17050 (GMB29_17050) pgsA 3563648..3564226 (-) 579 WP_136351174.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  GMB29_RS17055 (GMB29_17055) - 3564370..3565260 (-) 891 WP_136351175.1 RodZ domain-containing protein -
  GMB29_RS17060 (GMB29_17060) - 3565269..3566063 (-) 795 WP_136351176.1 YmfK family protein -
  GMB29_RS17065 (GMB29_17065) - 3566273..3566530 (-) 258 WP_136351177.1 DUF3243 domain-containing protein -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37726.90 Da        Isoelectric Point: 4.8438

>NTDB_id=402087 GMB29_RS17040 WP_136351172.1 3561049..3562089(-) (recA) [Metabacillus sediminilitoris strain DSL-17]
MSDRQAALDMALKQIEKQFGKGSIMKLGEQTDRKISTSPSGSLALDAALGVGGYPRGRIIEIYGPESSGKTTVALHAIAE
VQQQGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDILVIDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKIGIMFGNPETTPGGRALKFYSSVRLEVRRAETLKQGNDMVGNRT
KIKIVKNKVAPPFKVAEIDIMYGEGISKEGEIIDLGSELDIVQKSGSWYSYNEERLGQGRENAKQFLKENPALRIEIQEK
IRSHYGLDEEALLPEESQEELDLQND

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=402087 GMB29_RS17040 WP_136351172.1 3561049..3562089(-) (recA) [Metabacillus sediminilitoris strain DSL-17]
GTGAGCGATCGTCAAGCTGCCTTAGATATGGCGTTAAAACAAATAGAAAAGCAATTCGGTAAAGGTTCAATTATGAAATT
AGGGGAACAAACAGATAGAAAGATTTCAACTTCACCAAGTGGCTCGTTAGCACTTGATGCCGCATTAGGAGTAGGTGGAT
ACCCGCGTGGTAGAATTATAGAGATCTATGGTCCAGAGAGCTCTGGTAAAACAACTGTAGCCCTACATGCTATTGCAGAA
GTCCAACAGCAAGGTGGGCAAGCAGCATTTATTGATGCTGAGCATGCGCTTGACCCTGTATATGCCCAAAAACTTGGTGT
TAATATAGATGAGCTATTGCTTTCTCAGCCGGATACTGGAGAACAAGCACTTGAAATCGCAGAAGCACTTGTACGTAGTG
GTGCTGTTGACATTCTTGTAATTGACTCAGTCGCGGCGTTAGTTCCGAAAGCGGAAATTGAAGGTGAGATGGGTGATTCT
CACGTTGGTCTTCAAGCTCGTTTAATGTCACAGGCATTACGTAAACTATCAGGTGCGATTAATAAATCAAAAACAATCGC
TATTTTCATCAATCAAATTCGTGAAAAGATTGGCATTATGTTCGGTAACCCTGAAACAACACCAGGTGGACGTGCGTTAA
AGTTCTATTCATCTGTTCGCCTAGAGGTTCGTCGTGCAGAAACTCTTAAGCAAGGTAACGATATGGTTGGGAACAGAACG
AAAATCAAGATTGTGAAAAACAAAGTCGCACCACCATTCAAAGTAGCTGAAATAGATATTATGTATGGTGAAGGGATCTC
AAAAGAAGGAGAAATTATTGATTTAGGATCAGAGCTTGATATCGTGCAAAAAAGTGGTTCATGGTACTCATATAATGAAG
AACGCTTAGGTCAAGGTCGTGAAAATGCGAAACAATTTTTAAAAGAAAATCCTGCACTCCGTATAGAGATACAAGAAAAA
ATCCGCAGTCATTATGGTTTAGATGAAGAAGCTCTTTTACCTGAAGAAAGTCAAGAAGAATTAGATTTACAAAATGATTA
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4S4CAR0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

89.189

96.243

0.858
  recA Latilactobacillus sakei subsp. sakei 23K

73.121

100

0.731
  recA Streptococcus pyogenes NZ131

66.197

100

0.679
  recA Streptococcus mutans UA159

68.675

95.954

0.659
  recA Streptococcus mitis NCTC 12261

66.181

99.133

0.656
  recA Streptococcus pneumoniae D39

68.485

95.376

0.653
  recA Streptococcus pneumoniae R6

68.485

95.376

0.653
  recA Streptococcus pneumoniae Rx1

68.485

95.376

0.653
  recA Streptococcus pneumoniae TIGR4

68.485

95.376

0.653
  recA Streptococcus mitis SK321

68.182

95.376

0.65
  recA Lactococcus lactis subsp. cremoris KW2

66.667

95.376

0.636
  recA Helicobacter pylori strain NCTC11637

63.45

98.844

0.627
  recA Helicobacter pylori 26695

63.45

98.844

0.627
  recA Neisseria gonorrhoeae strain FA1090

63.636

98.555

0.627
  recA Neisseria gonorrhoeae MS11

63.636

98.555

0.627
  recA Neisseria gonorrhoeae MS11

63.636

98.555

0.627
  recA Ralstonia pseudosolanacearum GMI1000

65.549

94.798

0.621
  recA Vibrio cholerae strain A1552

63.393

97.11

0.616
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.393

97.11

0.616
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.417

94.22

0.607
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.914

94.509

0.604
  recA Glaesserella parasuis strain SC1401

59.012

99.422

0.587
  recA Acinetobacter baylyi ADP1

59.184

99.133

0.587
  recA Acinetobacter baumannii D1279779

62.112

93.064

0.578
  recA Pseudomonas stutzeri DSM 10701

62.305

92.775

0.578
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.562

92.486

0.569

Multiple sequence alignment