Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   GMB29_RS17045 Genome accession   NZ_CP046266
Coordinates   3562373..3563623 (-) Length   416 a.a.
NCBI ID   WP_136351173.1    Uniprot ID   A0A4V3WG73
Organism   Metabacillus sediminilitoris strain DSL-17     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3557373..3568623
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GMB29_RS17030 (GMB29_17030) - 3557826..3558620 (-) 795 WP_136351170.1 TIGR00282 family metallophosphoesterase -
  GMB29_RS17035 (GMB29_17035) rny 3558954..3560516 (-) 1563 WP_406600274.1 ribonuclease Y -
  GMB29_RS17040 (GMB29_17040) recA 3561049..3562089 (-) 1041 WP_136351172.1 recombinase RecA Machinery gene
  GMB29_RS17045 (GMB29_17045) cinA 3562373..3563623 (-) 1251 WP_136351173.1 competence/damage-inducible protein A Machinery gene
  GMB29_RS17050 (GMB29_17050) pgsA 3563648..3564226 (-) 579 WP_136351174.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  GMB29_RS17055 (GMB29_17055) - 3564370..3565260 (-) 891 WP_136351175.1 RodZ domain-containing protein -
  GMB29_RS17060 (GMB29_17060) - 3565269..3566063 (-) 795 WP_136351176.1 YmfK family protein -
  GMB29_RS17065 (GMB29_17065) - 3566273..3566530 (-) 258 WP_136351177.1 DUF3243 domain-containing protein -
  GMB29_RS17070 (GMB29_17070) ymfI 3566608..3567330 (-) 723 WP_136351178.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 46375.09 Da        Isoelectric Point: 5.2059

>NTDB_id=402088 GMB29_RS17045 WP_136351173.1 3562373..3563623(-) (cinA) [Metabacillus sediminilitoris strain DSL-17]
MNIRTEIIAVGSELLLGQIVNSNAQFLSQQLAELGMNVYYHTVVGDNPTRLEQAIDVAKKRSNIIIFTGGLGPTKDDLTK
ETISNALGKKLVFDQEALDSIENYFVQSKRIMSENNKKQALVLEGSYILKNDFGMAPGMALEADQTIYMLLPGPPSEMKP
MFKNYGREYFQKQLGFQEKIISRVVRYFGIGESQLETDIQDIIDEQVNPTVAPLAGDGEVTLRLTAKHVDELVANQLLNE
LEQKINQRVGEFFYGYEQTTLPLELKKLLIEKQKTISAAESLTGGMFSEQITALDGVSQFFKGSIVSYSNQMKAQILKVS
PQTLQEYGAVSEQCAKEMADQIRKLSNSDIGISFTGVAGPEPHEGQPVGTVFIGISMQNRETQVYSFHFVGTRKGIRVRT
VKYGCHYLVKLLTEIE

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=402088 GMB29_RS17045 WP_136351173.1 3562373..3563623(-) (cinA) [Metabacillus sediminilitoris strain DSL-17]
ATGAATATACGTACAGAAATAATTGCTGTTGGCTCTGAATTATTACTAGGTCAAATTGTAAATAGCAATGCTCAATTTCT
TTCTCAGCAGCTAGCAGAACTTGGGATGAATGTTTATTACCATACAGTTGTCGGTGACAATCCGACACGATTAGAGCAAG
CTATTGATGTTGCCAAAAAACGTTCTAATATCATTATTTTTACTGGAGGTCTCGGACCTACAAAAGACGATTTGACAAAA
GAAACGATTTCAAATGCACTTGGAAAGAAACTTGTGTTTGATCAAGAGGCGTTAGATAGTATTGAAAACTATTTTGTGCA
ATCAAAAAGAATCATGTCAGAAAATAATAAGAAGCAAGCCCTTGTACTTGAAGGTTCATACATATTGAAAAATGATTTCG
GTATGGCACCTGGCATGGCATTAGAGGCTGATCAAACGATTTACATGCTGTTACCAGGTCCGCCGAGTGAAATGAAGCCA
ATGTTCAAAAATTATGGCCGAGAATATTTCCAAAAACAACTTGGATTCCAAGAAAAGATTATTTCTCGTGTGGTAAGATA
CTTTGGAATTGGAGAATCACAGCTAGAAACTGATATACAAGACATCATAGACGAACAAGTTAACCCTACTGTTGCACCAT
TAGCTGGTGATGGGGAGGTTACCCTTCGATTAACTGCAAAGCATGTTGATGAACTGGTTGCAAATCAACTTTTAAACGAA
CTAGAGCAAAAGATTAATCAACGTGTTGGTGAATTTTTTTACGGTTATGAACAGACAACACTCCCACTAGAACTTAAAAA
GCTGTTAATAGAAAAGCAAAAAACGATTTCTGCAGCAGAAAGTTTAACTGGTGGAATGTTTTCTGAACAAATAACAGCGT
TGGATGGTGTTTCCCAATTCTTTAAAGGAAGTATTGTCAGCTATTCAAATCAAATGAAAGCTCAAATACTAAAAGTCTCA
CCACAAACTCTTCAGGAATATGGGGCTGTCAGTGAACAATGTGCAAAGGAAATGGCAGATCAAATCCGAAAGTTATCGAA
TAGCGATATTGGTATTAGTTTTACAGGTGTTGCAGGACCGGAACCTCATGAAGGCCAGCCAGTAGGTACCGTGTTTATTG
GCATTTCGATGCAAAATAGGGAAACTCAAGTGTATTCATTTCATTTTGTTGGAACAAGGAAAGGAATACGTGTTCGAACG
GTAAAGTATGGATGTCATTATTTAGTTAAACTATTAACTGAAATAGAATGA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(261-411)

Damage-inducible protein CinA KH domain (CinA_KH)

(182-255)

Probable molybdopterin binding domain (MoCF_biosynth)

(7-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4V3WG73

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

61.369

98.317

0.603
  cinA Streptococcus pneumoniae TIGR4

46.19

100

0.466
  cinA Streptococcus pneumoniae R6

45.714

100

0.462
  cinA Streptococcus pneumoniae Rx1

45.714

100

0.462
  cinA Streptococcus mitis SK321

45.714

100

0.462
  cinA Streptococcus pneumoniae D39

45.476

100

0.459
  cinA Streptococcus mitis NCTC 12261

45.476

100

0.459
  cinA Streptococcus mutans UA159

46.402

96.875

0.45
  cinA Streptococcus suis isolate S10

40.201

95.673

0.385

Multiple sequence alignment