Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   GDS87_RS05795 Genome accession   NZ_CP045835
Coordinates   1266416..1267480 (+) Length   354 a.a.
NCBI ID   WP_283871225.1    Uniprot ID   A0AAX3X1P1
Organism   Lysinibacillus pakistanensis strain LZH-9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1261416..1272480
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GDS87_RS05770 (GDS87_05700) - 1262141..1262398 (+) 258 WP_054770649.1 DUF3243 domain-containing protein -
  GDS87_RS05775 (GDS87_05705) - 1262623..1263411 (+) 789 WP_283871221.1 DUF3388 domain-containing protein -
  GDS87_RS05780 (GDS87_05710) - 1263437..1264354 (+) 918 WP_369594861.1 helix-turn-helix domain-containing protein -
  GDS87_RS05785 (GDS87_05715) pgsA 1264402..1264980 (+) 579 WP_369594862.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  GDS87_RS05790 (GDS87_05720) cinA 1264998..1266260 (+) 1263 WP_369594863.1 competence/damage-inducible protein A Machinery gene
  GDS87_RS05795 (GDS87_05725) recA 1266416..1267480 (+) 1065 WP_283871225.1 recombinase RecA Machinery gene
  GDS87_RS05800 (GDS87_05730) rny 1268088..1269647 (+) 1560 WP_283871226.1 ribonuclease Y -
  GDS87_RS05805 (GDS87_05735) - 1269977..1270774 (+) 798 WP_283871227.1 TIGR00282 family metallophosphoesterase -
  GDS87_RS05810 (GDS87_05740) - 1271000..1271266 (+) 267 WP_004224903.1 stage V sporulation protein S -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38167.34 Da        Isoelectric Point: 4.6405

>NTDB_id=398528 GDS87_RS05795 WP_283871225.1 1266416..1267480(+) (recA) [Lysinibacillus pakistanensis strain LZH-9]
MSDRKAALEQALKQIEKNFGKGSIMKLGEKTDLEIATSSSGSLALDAALGVGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQATGGQAAFIDAEHALDPIYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAIDIIVIDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQVREKIGVMFGNPETTPGGRALKFYSSVRLEVRRAEAIKQGNDIMGNRT
KVKIVKNKVAPPFRTAEVDIMYGEGISKEGETVDLGVELDIVQKSGSWYAYGDERLGQGRENAKQYLKENPAVMEEIANK
IRSSYGIAASSYTIAAHDEEEEMDEELMLLLEDE

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=398528 GDS87_RS05795 WP_283871225.1 1266416..1267480(+) (recA) [Lysinibacillus pakistanensis strain LZH-9]
ATGAGTGATCGTAAAGCAGCCTTAGAACAGGCGTTAAAACAAATTGAAAAGAACTTTGGTAAAGGTTCAATTATGAAACT
TGGCGAAAAAACCGATTTAGAAATTGCTACATCATCGAGCGGTTCGCTAGCACTTGATGCTGCACTAGGTGTTGGTGGTT
ATCCACGTGGGCGAATTATTGAAGTTTATGGTCCAGAATCATCAGGTAAAACAACGGTTGCTCTCCATGCAATTGCAGAG
GTGCAAGCAACTGGAGGACAAGCAGCATTTATCGATGCTGAGCATGCATTAGATCCAATTTATGCACAAAAATTAGGTGT
TAATATTGATGAACTACTATTATCGCAGCCGGATACAGGCGAGCAAGCCCTTGAAATTGCCGAAGCATTAGTTCGTAGTG
GTGCAATTGATATTATCGTTATTGACTCAGTGGCTGCATTAGTGCCTAAAGCTGAAATTGAGGGGGATATGGGTGATTCC
CATGTCGGTTTACAGGCACGTTTAATGTCTCAGGCATTACGTAAACTTTCTGGTGCTATTAATAAATCGAAAACGATTGC
TATTTTCATTAACCAAGTACGTGAAAAAATTGGTGTAATGTTCGGAAATCCAGAAACAACACCAGGTGGACGTGCTCTTA
AGTTCTATAGCTCTGTTCGTTTAGAGGTTCGCCGCGCAGAAGCCATTAAACAAGGCAATGATATTATGGGGAATCGCACA
AAAGTGAAGATTGTGAAAAACAAAGTTGCACCACCTTTCCGTACAGCTGAGGTAGATATTATGTATGGAGAAGGGATTTC
AAAAGAGGGCGAAACAGTTGATTTAGGTGTTGAGCTTGACATCGTTCAAAAAAGCGGCTCTTGGTATGCTTATGGTGATG
AACGTTTGGGGCAAGGACGCGAAAACGCAAAACAATATTTAAAAGAAAACCCTGCCGTTATGGAGGAAATTGCTAATAAG
ATTCGTTCCTCTTATGGTATTGCTGCATCTTCATACACAATCGCTGCTCATGATGAGGAAGAAGAAATGGATGAAGAATT
AATGCTTCTTCTTGAAGATGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

86.544

92.373

0.799
  recA Latilactobacillus sakei subsp. sakei 23K

71.225

99.153

0.706
  recA Streptococcus pneumoniae Rx1

64.384

100

0.664
  recA Streptococcus pneumoniae D39

64.384

100

0.664
  recA Streptococcus pneumoniae R6

64.384

100

0.664
  recA Streptococcus pneumoniae TIGR4

64.384

100

0.664
  recA Streptococcus mitis NCTC 12261

64.543

100

0.658
  recA Streptococcus mitis SK321

63.989

100

0.653
  recA Streptococcus mutans UA159

63.056

100

0.641
  recA Streptococcus pyogenes NZ131

63.944

100

0.641
  recA Lactococcus lactis subsp. cremoris KW2

66.364

93.22

0.619
  recA Acinetobacter baylyi ADP1

62.974

96.893

0.61
  recA Neisseria gonorrhoeae strain FA1090

65.653

92.938

0.61
  recA Neisseria gonorrhoeae MS11

65.653

92.938

0.61
  recA Neisseria gonorrhoeae MS11

65.653

92.938

0.61
  recA Glaesserella parasuis strain SC1401

61.047

97.175

0.593
  recA Helicobacter pylori strain NCTC11637

64.615

91.808

0.593
  recA Ralstonia pseudosolanacearum GMI1000

63.72

92.655

0.59
  recA Helicobacter pylori 26695

64.308

91.808

0.59
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.11

92.09

0.59
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.11

92.09

0.59
  recA Acinetobacter baumannii D1279779

61.062

95.763

0.585
  recA Pseudomonas stutzeri DSM 10701

60

97.458

0.585
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.539

91.243

0.571
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.125

90.395

0.571
  recA Vibrio cholerae strain A1552

63.125

90.395

0.571

Multiple sequence alignment