Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   GDS87_RS05790 Genome accession   NZ_CP045835
Coordinates   1264998..1266260 (+) Length   420 a.a.
NCBI ID   WP_369594863.1    Uniprot ID   -
Organism   Lysinibacillus pakistanensis strain LZH-9     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1259998..1271260
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GDS87_RS05760 (GDS87_05690) - 1260070..1261371 (+) 1302 WP_283871219.1 pitrilysin family protein -
  GDS87_RS05765 (GDS87_05695) - 1261368..1262096 (+) 729 WP_283871220.1 SDR family oxidoreductase -
  GDS87_RS05770 (GDS87_05700) - 1262141..1262398 (+) 258 WP_054770649.1 DUF3243 domain-containing protein -
  GDS87_RS05775 (GDS87_05705) - 1262623..1263411 (+) 789 WP_283871221.1 DUF3388 domain-containing protein -
  GDS87_RS05780 (GDS87_05710) - 1263437..1264354 (+) 918 WP_369594861.1 helix-turn-helix domain-containing protein -
  GDS87_RS05785 (GDS87_05715) pgsA 1264402..1264980 (+) 579 WP_369594862.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  GDS87_RS05790 (GDS87_05720) cinA 1264998..1266260 (+) 1263 WP_369594863.1 competence/damage-inducible protein A Machinery gene
  GDS87_RS05795 (GDS87_05725) recA 1266416..1267480 (+) 1065 WP_283871225.1 recombinase RecA Machinery gene
  GDS87_RS05800 (GDS87_05730) rny 1268088..1269647 (+) 1560 WP_283871226.1 ribonuclease Y -
  GDS87_RS05805 (GDS87_05735) - 1269977..1270774 (+) 798 WP_283871227.1 TIGR00282 family metallophosphoesterase -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 45336.82 Da        Isoelectric Point: 4.9740

>NTDB_id=398527 GDS87_RS05790 WP_369594863.1 1264998..1266260(+) (cinA) [Lysinibacillus pakistanensis strain LZH-9]
MNAEILAVGSELLLGQITNTNAKFISNQLSELGINVYYHTVVGDNAKRLEEAITIAESRADLIIFSGGLGPTKDDLTKET
IARHLDISLEFDEVALTYIEQFFAKRGRSMTENNRKQALVLAGCEVLANHHGMAPGMILTKGGRTYILLPGPPKELEPMF
QFEAKPKLGALLNAGGVIVSHVMRFYGIGEAELEVRVQAILDTQTNPTVAPLASDGEVTLRVTAKAETVQEAQQLIATKV
AEIQALVGEYQYGVDDDSLASKTVEMLLDNQLTISAAESLTAGLFQSELAEISGVGNALTGGVVTYTEEAKINQLGIPKQ
LLDTHGIVSSECAAAMASAVKQKFGTNIGIGLTGAAGPTAHDHQPVGTVWIGIAIDDEEPITYLLHLSGMRNTNRLRAVK
FTCHYLMQLLEERGYNKRYK

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=398527 GDS87_RS05790 WP_369594863.1 1264998..1266260(+) (cinA) [Lysinibacillus pakistanensis strain LZH-9]
ATGAATGCTGAAATTCTTGCAGTTGGTTCAGAATTATTGCTAGGACAAATTACAAATACAAACGCGAAATTTATTTCTAA
TCAGCTGTCGGAGTTAGGGATAAATGTGTATTATCATACGGTTGTTGGGGATAATGCCAAACGTTTAGAGGAAGCTATAA
CAATTGCGGAGTCTCGTGCAGATTTAATCATATTTTCTGGTGGGCTTGGTCCTACAAAGGATGATTTAACGAAGGAAACA
ATCGCACGTCATCTTGATATTTCGCTTGAATTTGATGAGGTCGCCCTAACGTATATTGAGCAGTTTTTTGCTAAACGAGG
TCGTTCAATGACTGAAAATAATCGTAAACAGGCATTAGTATTAGCTGGTTGTGAAGTACTAGCAAACCATCATGGAATGG
CACCTGGCATGATACTAACAAAAGGTGGACGAACGTATATCTTGCTACCTGGGCCACCGAAAGAGCTTGAGCCAATGTTT
CAATTTGAGGCAAAGCCAAAGCTTGGTGCATTGTTAAATGCTGGAGGTGTTATTGTCTCTCACGTTATGCGCTTTTATGG
TATCGGGGAGGCAGAGCTGGAGGTTCGTGTTCAAGCTATTTTAGATACACAAACAAATCCTACTGTTGCACCGCTTGCCT
CAGATGGTGAAGTGACATTGCGTGTAACTGCTAAAGCAGAAACAGTACAGGAGGCACAGCAGCTTATTGCGACTAAGGTA
GCTGAGATTCAAGCACTTGTTGGCGAATATCAATACGGCGTAGATGACGATTCTCTTGCCTCTAAAACAGTAGAAATGTT
ACTTGATAATCAATTAACTATATCCGCTGCGGAAAGTTTAACTGCGGGGTTATTTCAATCAGAGCTGGCCGAAATTTCAG
GAGTAGGGAATGCGCTTACTGGTGGCGTTGTCACGTATACAGAAGAGGCAAAAATAAATCAGCTTGGCATTCCTAAACAA
TTACTAGATACACATGGCATTGTCAGCAGTGAATGCGCTGCGGCTATGGCTAGTGCTGTAAAGCAAAAATTTGGTACAAA
TATTGGTATTGGCTTAACTGGGGCAGCAGGACCAACAGCACACGATCACCAACCAGTTGGAACAGTTTGGATTGGTATCG
CCATTGACGATGAAGAACCAATCACGTATTTACTTCATTTATCGGGTATGCGGAATACAAATCGACTTCGTGCAGTAAAG
TTTACATGTCATTATCTAATGCAGCTTTTGGAAGAAAGAGGATATAATAAACGCTATAAATAG

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Competence-damaged protein (CinA)

(257-409)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

52.427

98.095

0.514
  cinA Streptococcus mitis SK321

45.596

91.905

0.419
  cinA Streptococcus pneumoniae Rx1

45.455

91.667

0.417
  cinA Streptococcus pneumoniae TIGR4

45.455

91.667

0.417
  cinA Streptococcus pneumoniae R6

45.455

91.667

0.417
  cinA Streptococcus mitis NCTC 12261

45.078

91.905

0.414
  cinA Streptococcus pneumoniae D39

45.195

91.667

0.414
  cinA Streptococcus mutans UA159

44.855

90.238

0.405

Multiple sequence alignment