Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   GE073_RS14050 Genome accession   NZ_CP045802
Coordinates   3267650..3268714 (-) Length   354 a.a.
NCBI ID   WP_101809220.1    Uniprot ID   -
Organism   Paenibacillus sp. B01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3262650..3273714
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE073_RS14025 (GE073_14025) - 3262790..3263767 (-) 978 WP_153783717.1 dipeptidase -
  GE073_RS14030 (GE073_14030) - 3263900..3264160 (-) 261 WP_028597363.1 stage V sporulation protein S -
  GE073_RS14035 (GE073_14035) - 3264288..3265082 (-) 795 WP_101809217.1 TIGR00282 family metallophosphoesterase -
  GE073_RS14040 (GE073_14040) rny 3265141..3266682 (-) 1542 WP_101809218.1 ribonuclease Y -
  GE073_RS14045 (GE073_14045) - 3266865..3267548 (-) 684 WP_153783718.1 regulatory protein RecX -
  GE073_RS14050 (GE073_14050) recA 3267650..3268714 (-) 1065 WP_101809220.1 recombinase RecA Machinery gene
  GE073_RS14055 (GE073_14055) cinA 3268953..3270200 (-) 1248 WP_153783719.1 competence/damage-inducible protein A Machinery gene
  GE073_RS14060 (GE073_14060) pgsA 3270280..3270855 (-) 576 WP_028597369.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  GE073_RS14065 (GE073_14065) - 3270937..3271428 (-) 492 WP_028597370.1 YajQ family cyclic di-GMP-binding protein -
  GE073_RS14070 (GE073_14070) - 3271612..3272499 (-) 888 WP_164820109.1 helix-turn-helix domain-containing protein -
  GE073_RS14075 (GE073_14075) - 3272523..3273287 (-) 765 WP_028597371.1 DUF3388 domain-containing protein -
  GE073_RS14080 (GE073_14080) - 3273443..3273694 (-) 252 WP_028597372.1 DUF3243 domain-containing protein -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 37977.30 Da        Isoelectric Point: 4.9860

>NTDB_id=397335 GE073_RS14050 WP_101809220.1 3267650..3268714(-) (recA) [Paenibacillus sp. B01]
MSDRRAALDMALRQIEKQFGKGSIMKLGESAQLAVETVSSGALALDIALGIGGFPRGRIIEVYGPESSGKTTVALHAIAE
VQRTGGQAAFIDAEHALDPLYASKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAISKSKTIAIFINQLREKVGVMFGNPETTPGGRALKFYSSVRLDVRRIESIKQGTDVVGNRT
RIKVVKNKVAPPFRQAELDIMYGEGISRVGSIIDIGVEMDIVQKSGAWFSFNGDRLGQGRENAKQFLKDNEPIASVIEGK
IREAHNLNAAAERAAGAEVSKDEADEFEELELDV

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=397335 GE073_RS14050 WP_101809220.1 3267650..3268714(-) (recA) [Paenibacillus sp. B01]
TTGTCAGATCGCCGCGCAGCTTTAGATATGGCGCTTCGCCAGATTGAGAAACAATTCGGAAAAGGCTCCATCATGAAATT
AGGCGAGTCCGCCCAGCTGGCCGTTGAAACGGTCTCCAGCGGCGCCCTCGCATTGGATATCGCGCTCGGCATCGGGGGCT
TCCCTCGCGGCCGCATCATCGAAGTCTACGGACCGGAGTCGTCCGGCAAGACGACCGTCGCCCTGCACGCGATCGCCGAA
GTGCAGCGCACGGGCGGACAAGCCGCCTTCATCGACGCGGAGCATGCGCTGGATCCGCTCTACGCCAGCAAGCTCGGCGT
CAACATCGACGAGCTGCTGCTGTCCCAGCCGGATACGGGCGAGCAGGCGCTGGAGATCGCCGAGGCGCTCGTGCGCAGCG
GCGCCGTCGACATCATCGTCATCGACTCCGTCGCGGCGCTCGTGCCGAAGGCCGAGATCGAGGGCGAGATGGGCGACTCC
CACGTCGGCCTCCAGGCGCGCCTCATGTCGCAGGCGCTGCGCAAGCTGTCCGGAGCGATCAGCAAGTCCAAGACGATCGC
CATCTTCATCAACCAGCTCCGCGAGAAGGTCGGCGTCATGTTCGGCAACCCGGAGACGACTCCGGGGGGACGCGCCCTGA
AGTTCTACAGCAGCGTGCGGCTGGACGTGCGCCGCATCGAGAGCATCAAGCAAGGCACCGACGTCGTGGGCAACCGGACC
CGCATCAAGGTCGTCAAGAACAAGGTGGCGCCTCCGTTCCGCCAGGCCGAGCTGGACATCATGTACGGCGAAGGCATCTC
GCGCGTCGGCAGCATCATCGACATCGGCGTGGAGATGGACATCGTGCAGAAGAGCGGCGCTTGGTTCAGCTTCAACGGCG
ACCGCCTCGGCCAAGGACGGGAGAACGCCAAGCAGTTCCTCAAGGACAACGAGCCGATCGCAAGCGTGATCGAAGGCAAG
ATCCGCGAGGCGCATAACCTCAATGCGGCTGCGGAGCGCGCCGCCGGCGCCGAAGTTTCGAAGGACGAGGCGGACGAGTT
CGAGGAGCTGGAGCTCGACGTCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

82.317

92.655

0.763
  recA Latilactobacillus sakei subsp. sakei 23K

71.818

93.22

0.669
  recA Streptococcus mutans UA159

64.903

100

0.658
  recA Streptococcus mitis NCTC 12261

64.266

100

0.655
  recA Streptococcus pyogenes NZ131

65.352

100

0.655
  recA Streptococcus mitis SK321

63.712

100

0.65
  recA Lactococcus lactis subsp. cremoris KW2

67.273

93.22

0.627
  recA Streptococcus pneumoniae D39

66.364

93.22

0.619
  recA Streptococcus pneumoniae Rx1

66.364

93.22

0.619
  recA Streptococcus pneumoniae R6

66.364

93.22

0.619
  recA Streptococcus pneumoniae TIGR4

66.364

93.22

0.619
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.118

96.045

0.616
  recA Vibrio cholerae strain A1552

64.118

96.045

0.616
  recA Glaesserella parasuis strain SC1401

61.823

99.153

0.613
  recA Ralstonia pseudosolanacearum GMI1000

65.854

92.655

0.61
  recA Pseudomonas stutzeri DSM 10701

62.099

96.893

0.602
  recA Neisseria gonorrhoeae MS11

66.355

90.678

0.602
  recA Neisseria gonorrhoeae MS11

66.355

90.678

0.602
  recA Neisseria gonorrhoeae strain FA1090

66.355

90.678

0.602
  recA Acinetobacter baylyi ADP1

60.745

98.588

0.599
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.632

98.305

0.596
  recA Acinetobacter baumannii D1279779

64.174

90.678

0.582
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.691

92.373

0.579
  recA Helicobacter pylori 26695

62.229

91.243

0.568
  recA Helicobacter pylori strain NCTC11637

61.92

91.243

0.565
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.092

86.441

0.537

Multiple sequence alignment