Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   GE073_RS14055 Genome accession   NZ_CP045802
Coordinates   3268953..3270200 (-) Length   415 a.a.
NCBI ID   WP_153783719.1    Uniprot ID   A0A5Q2NLH1
Organism   Paenibacillus sp. B01     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3263953..3275200
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE073_RS14035 (GE073_14035) - 3264288..3265082 (-) 795 WP_101809217.1 TIGR00282 family metallophosphoesterase -
  GE073_RS14040 (GE073_14040) rny 3265141..3266682 (-) 1542 WP_101809218.1 ribonuclease Y -
  GE073_RS14045 (GE073_14045) - 3266865..3267548 (-) 684 WP_153783718.1 regulatory protein RecX -
  GE073_RS14050 (GE073_14050) recA 3267650..3268714 (-) 1065 WP_101809220.1 recombinase RecA Machinery gene
  GE073_RS14055 (GE073_14055) cinA 3268953..3270200 (-) 1248 WP_153783719.1 competence/damage-inducible protein A Machinery gene
  GE073_RS14060 (GE073_14060) pgsA 3270280..3270855 (-) 576 WP_028597369.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  GE073_RS14065 (GE073_14065) - 3270937..3271428 (-) 492 WP_028597370.1 YajQ family cyclic di-GMP-binding protein -
  GE073_RS14070 (GE073_14070) - 3271612..3272499 (-) 888 WP_164820109.1 helix-turn-helix domain-containing protein -
  GE073_RS14075 (GE073_14075) - 3272523..3273287 (-) 765 WP_028597371.1 DUF3388 domain-containing protein -
  GE073_RS14080 (GE073_14080) - 3273443..3273694 (-) 252 WP_028597372.1 DUF3243 domain-containing protein -
  GE073_RS14085 (GE073_14085) ymfI 3273806..3274537 (-) 732 WP_052332921.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 415 a.a.        Molecular weight: 44615.93 Da        Isoelectric Point: 5.3441

>NTDB_id=397336 GE073_RS14055 WP_153783719.1 3268953..3270200(-) (cinA) [Paenibacillus sp. B01]
MKAEIIAVGTELLLGQIVNTNARYLSQGLAALGIDVFFQTVVGDNAARIRQAIDTARSRADLLLFTGGLGPTMDDLTKDV
LGDYLGRRLVVHEPTMEAMERFFASRGSHMVESNRRQANWIEGSVALENDAGLAVGNALEQDGTRYILLPGPPKEMMPMF
EGPATRWLLAELGAGAPLHSRILRFAGIGESRLEHELIDLIESQSDPTIAPYAKEGEVAIRLSSKSADEAQALDRIERMA
QQIRERLGAHIYAEEDISLEEAVLRRLRTRRMRVSVAESCTGGLLAELITGIPGSSGEFLGGIVTYTNTMKHKLLGIPLA
QLEGADAPGAVSASTAALMAQRVAETTGSDWGVSITGVAGPGSSEGKPIGLVYIGIARKGGEAETHELNAGGNRDMVRIR
AAKHALYRLWLALQE

Nucleotide


Download         Length: 1248 bp        

>NTDB_id=397336 GE073_RS14055 WP_153783719.1 3268953..3270200(-) (cinA) [Paenibacillus sp. B01]
GTGAAAGCCGAAATCATCGCTGTTGGAACGGAACTGCTGCTTGGACAGATCGTCAATACGAACGCACGCTATCTTTCCCA
AGGACTCGCCGCCCTCGGCATCGACGTCTTTTTCCAGACGGTCGTCGGCGACAACGCCGCCCGCATCCGTCAGGCGATCG
ATACGGCACGCTCCCGCGCCGACCTGCTGCTGTTCACCGGCGGTCTCGGGCCGACGATGGACGACCTCACCAAGGACGTG
CTCGGCGACTATCTCGGGCGCCGGCTCGTCGTCCATGAGCCGACGATGGAGGCGATGGAGCGGTTTTTCGCTTCCCGCGG
AAGCCATATGGTCGAGAGCAACCGCCGGCAGGCCAACTGGATCGAGGGCAGCGTAGCGCTCGAGAACGACGCGGGGCTTG
CCGTCGGCAACGCGCTGGAGCAGGACGGAACCCGCTATATCCTGCTGCCGGGTCCGCCCAAGGAAATGATGCCGATGTTC
GAGGGGCCGGCGACGCGCTGGCTGCTGGCCGAGCTCGGAGCGGGGGCTCCGCTGCATTCGCGCATCCTGCGCTTCGCCGG
CATCGGCGAGTCGCGGCTCGAGCATGAGCTGATCGACCTGATCGAGAGCCAGAGCGATCCGACGATCGCTCCGTATGCCA
AGGAAGGCGAGGTGGCGATCCGCCTCTCCAGCAAGTCCGCGGACGAGGCGCAGGCGCTGGACCGCATCGAGCGGATGGCG
CAGCAGATCCGCGAGCGCCTCGGCGCCCATATCTATGCCGAAGAGGACATCTCGCTCGAAGAGGCCGTGCTGCGGCGGCT
GCGCACGAGGCGGATGCGGGTCAGCGTGGCCGAGAGCTGCACGGGCGGCCTGCTGGCCGAGCTCATCACCGGCATCCCCG
GCAGCAGCGGCGAGTTCCTCGGCGGCATCGTCACCTATACGAATACGATGAAGCACAAGCTGCTCGGCATTCCGCTCGCC
CAGCTGGAGGGGGCGGACGCGCCTGGCGCGGTGAGCGCCTCCACCGCGGCGCTAATGGCGCAGCGGGTGGCGGAGACGAC
CGGCAGCGACTGGGGCGTCTCGATTACCGGCGTCGCCGGGCCGGGCTCCTCCGAGGGCAAGCCGATCGGCCTCGTCTACA
TCGGCATCGCCCGCAAAGGCGGGGAGGCCGAGACGCATGAGCTGAACGCCGGCGGCAATCGCGACATGGTGCGCATCCGC
GCCGCCAAGCACGCGCTGTACCGGCTCTGGCTGGCGCTCCAGGAATAG

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-162)

Competence-damaged protein (CinA)

(258-410)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5Q2NLH1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis NCTC 12261

47.642

100

0.487
  cinA Streptococcus mitis SK321

47.17

100

0.482
  cinA Streptococcus pneumoniae TIGR4

46.698

100

0.477
  cinA Streptococcus pneumoniae Rx1

46.698

100

0.477
  cinA Streptococcus pneumoniae R6

46.698

100

0.477
  cinA Streptococcus pneumoniae D39

46.462

100

0.475
  cinA Bacillus subtilis subsp. subtilis str. 168

44.928

99.759

0.448
  cinA Streptococcus mutans UA159

45.255

99.036

0.448
  cinA Streptococcus suis isolate S10

42.211

95.904

0.405

Multiple sequence alignment