Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   FIU87_RS09515 Genome accession   NZ_CP045403
Coordinates   1815430..1816473 (+) Length   347 a.a.
NCBI ID   WP_152444375.1    Uniprot ID   A0A5P9HNN4
Organism   Bacillus sp. THAF10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1810430..1821473
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIU87_RS09490 (FIU87_09760) - 1810944..1811201 (+) 258 WP_152444371.1 DUF3243 domain-containing protein -
  FIU87_RS09495 (FIU87_09765) - 1811341..1812132 (+) 792 WP_152444372.1 DUF3388 domain-containing protein -
  FIU87_RS09500 (FIU87_09770) - 1812153..1813040 (+) 888 WP_152444373.1 RodZ domain-containing protein -
  FIU87_RS09505 (FIU87_09775) pgsA 1813154..1813735 (+) 582 WP_152446489.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  FIU87_RS09510 (FIU87_09780) cinA 1813777..1815021 (+) 1245 WP_152444374.1 competence/damage-inducible protein A Machinery gene
  FIU87_RS09515 (FIU87_09785) recA 1815430..1816473 (+) 1044 WP_152444375.1 recombinase RecA Machinery gene
  FIU87_RS09520 (FIU87_09790) rny 1816830..1818395 (+) 1566 WP_172971007.1 ribonuclease Y -
  FIU87_RS09525 (FIU87_09795) - 1818471..1819265 (+) 795 WP_152446491.1 TIGR00282 family metallophosphoesterase -
  FIU87_RS09530 (FIU87_09800) spoVS 1819416..1819676 (+) 261 WP_010193268.1 stage V sporulation protein SpoVS -
  FIU87_RS09535 (FIU87_09805) - 1819966..1820889 (+) 924 WP_152444376.1 dipeptidase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37733.91 Da        Isoelectric Point: 5.3368

>NTDB_id=393801 FIU87_RS09515 WP_152444375.1 1815430..1816473(+) (recA) [Bacillus sp. THAF10]
MGDRKAALDMALKQIEKQFGKGSIMKLGEQAERKISTVPSGSLALDVALGAGGYPRGRVIEIYGPESSGKTTVALHAIAE
VQQNGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVVDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGHDIVGNKT
KIKVVKNKIAPPFKVAEVDIMYGEGISKEGEVIDMASDLDIVQKSGSWYSYNEERLGQGRENAKQFLKENKDVLKEIHQQ
IRDHHGLDKEVTAPPEENQDDQAELDF

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=393801 FIU87_RS09515 WP_152444375.1 1815430..1816473(+) (recA) [Bacillus sp. THAF10]
GTGGGTGATCGTAAAGCTGCATTAGATATGGCGTTAAAACAGATAGAAAAGCAATTTGGTAAAGGTTCTATTATGAAGCT
CGGGGAACAGGCAGAACGAAAAATTTCAACCGTACCAAGCGGCTCCTTAGCATTGGATGTTGCATTAGGAGCTGGTGGGT
ATCCACGTGGAAGAGTAATTGAAATCTATGGTCCTGAATCTTCCGGTAAAACAACGGTTGCTCTCCATGCCATTGCTGAG
GTTCAGCAAAATGGTGGACAGGCCGCATTTATTGATGCAGAGCATGCGCTTGATCCAGTATATGCTCAAAAATTAGGAGT
TAATATTGATGAACTCTTACTATCCCAGCCTGATACTGGAGAACAGGCACTTGAAATAGCGGAAGCTCTTGTTCGAAGTG
GTGCAGTTGATATTATCGTAGTCGACTCTGTAGCAGCATTAGTACCGAAAGCGGAAATTGAAGGCGAAATGGGTGACTCC
CATGTTGGTCTTCAAGCGCGTTTAATGTCTCAAGCATTAAGAAAGCTTTCAGGTGCCATCAATAAGTCTAAAACTATTGC
GATTTTCATTAACCAAATTCGTGAAAAAGTGGGTGTTATGTTCGGTAATCCTGAAACAACACCTGGTGGGCGCGCTCTAA
AATTCTATTCTTCTGTTCGCCTAGAAGTACGTCGTGCAGAGCAATTAAAGCAGGGCCACGATATTGTCGGTAACAAAACA
AAAATTAAAGTTGTGAAAAATAAAATTGCTCCTCCATTTAAAGTTGCAGAAGTTGATATTATGTATGGAGAAGGTATATC
TAAAGAAGGGGAAGTCATCGACATGGCATCTGATTTAGATATCGTTCAAAAGAGCGGATCTTGGTATTCCTATAATGAGG
AAAGATTAGGACAAGGACGCGAAAATGCGAAACAATTCCTTAAAGAAAATAAGGATGTACTAAAAGAAATTCATCAGCAA
ATTCGTGATCATCACGGACTAGACAAAGAAGTAACTGCTCCACCTGAAGAAAATCAAGATGACCAAGCGGAGTTAGACTT
CTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5P9HNN4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

89.329

94.524

0.844
  recA Latilactobacillus sakei subsp. sakei 23K

73.81

96.83

0.715
  recA Streptococcus mitis SK321

69.054

100

0.695
  recA Streptococcus mitis NCTC 12261

68.768

100

0.692
  recA Streptococcus pneumoniae Rx1

68.786

99.712

0.686
  recA Streptococcus pneumoniae D39

68.786

99.712

0.686
  recA Streptococcus pneumoniae R6

68.786

99.712

0.686
  recA Streptococcus pneumoniae TIGR4

68.786

99.712

0.686
  recA Streptococcus mutans UA159

69.88

95.677

0.669
  recA Streptococcus pyogenes NZ131

70.427

94.524

0.666
  recA Lactococcus lactis subsp. cremoris KW2

68.358

96.542

0.66
  recA Neisseria gonorrhoeae strain FA1090

62.537

97.695

0.611
  recA Neisseria gonorrhoeae MS11

62.537

97.695

0.611
  recA Neisseria gonorrhoeae MS11

62.537

97.695

0.611
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.798

92.507

0.599
  recA Vibrio cholerae strain A1552

64.798

92.507

0.599
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.641

98.847

0.599
  recA Helicobacter pylori 26695

61.607

96.83

0.597
  recA Helicobacter pylori strain NCTC11637

61.607

96.83

0.597
  recA Ralstonia pseudosolanacearum GMI1000

66.134

90.202

0.597
  recA Acinetobacter baumannii D1279779

63.354

92.795

0.588
  recA Acinetobacter baylyi ADP1

62.769

93.66

0.588
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.385

94.236

0.588
  recA Glaesserella parasuis strain SC1401

63.438

92.219

0.585
  recA Pseudomonas stutzeri DSM 10701

62.5

92.219

0.576
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.61

93.084

0.573

Multiple sequence alignment