Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   GYMC52_RS06235 Genome accession   NC_014915
Coordinates   1237897..1238730 (+) Length   277 a.a.
NCBI ID   WP_013523432.1    Uniprot ID   -
Organism   Geobacillus sp. Y412MC52     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1232897..1243730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GYMC52_RS06220 (GYMC52_1205) cinA 1233457..1234701 (+) 1245 WP_013523429.1 competence/damage-inducible protein A Machinery gene
  GYMC52_RS06225 (GYMC52_1206) - 1234880..1235248 (+) 369 Protein_1192 ATPase domain-containing protein -
  GYMC52_RS06230 (GYMC52_1207) - 1235962..1237869 (+) 1908 WP_013523431.1 group II intron reverse transcriptase -
  GYMC52_RS06235 (GYMC52_1208) recA 1237897..1238730 (+) 834 WP_013523432.1 recombinase RecA Machinery gene
  GYMC52_RS06240 (GYMC52_1209) ltrA 1239332..1240594 (+) 1263 WP_013522881.1 group II intron reverse transcriptase/maturase -
  GYMC52_RS06245 (GYMC52_1210) rny 1240998..1242554 (+) 1557 WP_013523433.1 ribonuclease Y -
  GYMC52_RS06250 (GYMC52_1211) - 1242656..1243450 (+) 795 WP_011230798.1 TIGR00282 family metallophosphoesterase -

Sequence

Protein


Download         Length: 277 a.a.        Molecular weight: 30561.99 Da        Isoelectric Point: 6.9772

>NTDB_id=39370 GYMC52_RS06235 WP_013523432.1 1237897..1238730(+) (recA) [Geobacillus sp. Y412MC52]
MLLPCHREVIWWRDSPKGAIEAVPVERRVRGNSHARCGVGEKPEIASKAYLSLSLEIAEALVRSGAVDIIVIDSVAALVP
KAEIEGEMGDAHVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYASVRLEVRRAEQI
KQGNDMVGNKTKIKVVKNKVAPPFKTADVDIMYGEGISREGEILDMASELDIVQKSGSWYSYKDERLGQGRENAKQFLKE
NPHIADEIARAIRQHYGIDVEEGTSEPQQDGFGLLEE

Nucleotide


Download         Length: 834 bp        

>NTDB_id=39370 GYMC52_RS06235 WP_013523432.1 1237897..1238730(+) (recA) [Geobacillus sp. Y412MC52]
GTGCTGCTGCCATGTCATCGCGAGGTGATATGGTGGAGAGATAGCCCAAAGGGGGCTATCGAAGCTGTCCCGGTGGAACG
CCGTGTGCGGGGAAACTCGCACGCACGGTGTGGGGTGGGGGAAAAGCCGGAGATTGCATCAAAGGCTTACCTATCACTAT
CGCTCGAAATCGCGGAAGCGCTCGTGCGAAGCGGCGCGGTCGATATTATCGTCATCGACTCGGTGGCGGCGCTTGTGCCG
AAAGCGGAAATTGAAGGGGAGATGGGCGACGCCCATGTTGGCTTGCAAGCGCGGCTTATGTCCCAGGCGCTTCGCAAGCT
GTCTGGCGCCATTAACAAATCGAAAACGATCGCCATCTTCATCAACCAAATTCGCGAAAAAGTCGGCGTCATGTTTGGCA
ATCCGGAAACGACGCCGGGCGGGCGGGCGCTCAAGTTTTACGCTTCCGTCCGCCTAGAGGTGCGCCGCGCCGAGCAAATT
AAGCAAGGCAATGATATGGTCGGCAACAAGACGAAAATTAAAGTCGTCAAAAACAAAGTTGCGCCGCCATTTAAAACGGC
TGACGTCGACATTATGTACGGCGAAGGCATTTCCCGCGAAGGGGAAATTCTCGACATGGCGTCCGAATTGGACATCGTGC
AAAAAAGCGGTTCGTGGTATTCGTACAAAGACGAGCGGCTTGGCCAAGGGCGGGAAAACGCGAAGCAATTTTTGAAGGAA
AACCCGCACATCGCCGATGAGATCGCCCGCGCCATCCGCCAGCATTACGGCATCGACGTTGAAGAGGGAACAAGCGAACC
GCAGCAAGACGGGTTCGGATTGCTTGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(54-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

86.408

74.368

0.643
  recA Latilactobacillus sakei subsp. sakei 23K

74.429

79.061

0.588
  recA Streptococcus pneumoniae D39

66.518

80.866

0.538
  recA Streptococcus pneumoniae R6

66.518

80.866

0.538
  recA Streptococcus pneumoniae TIGR4

66.518

80.866

0.538
  recA Streptococcus pneumoniae Rx1

66.518

80.866

0.538
  recA Streptococcus mitis NCTC 12261

67.273

79.422

0.534
  recA Streptococcus mitis SK321

66.364

79.422

0.527
  recA Streptococcus mutans UA159

66.514

78.7

0.523
  recA Streptococcus pyogenes NZ131

68.599

74.729

0.513
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.15

74.729

0.502
  recA Ralstonia pseudosolanacearum GMI1000

67.805

74.007

0.502
  recA Lactococcus lactis subsp. cremoris KW2

64.789

76.895

0.498
  recA Neisseria gonorrhoeae MS11

61.364

79.422

0.487
  recA Neisseria gonorrhoeae MS11

61.364

79.422

0.487
  recA Neisseria gonorrhoeae strain FA1090

61.364

79.422

0.487
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.107

74.368

0.469
  recA Helicobacter pylori 26695

62.439

74.007

0.462
  recA Helicobacter pylori strain NCTC11637

62.439

74.007

0.462
  recA Pseudomonas stutzeri DSM 10701

63.5

72.202

0.458
  recA Acinetobacter baumannii D1279779

62.871

72.924

0.458
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.687

72.563

0.455
  recA Vibrio cholerae strain A1552

62.687

72.563

0.455
  recA Glaesserella parasuis strain SC1401

62.687

72.563

0.455
  recA Acinetobacter baylyi ADP1

61.386

72.924

0.448
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.204

70.758

0.426

Multiple sequence alignment