Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   GYMC52_RS06220 Genome accession   NC_014915
Coordinates   1233457..1234701 (+) Length   414 a.a.
NCBI ID   WP_013523429.1    Uniprot ID   A0A0E0TAL2
Organism   Geobacillus sp. Y412MC52     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1228457..1239701
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GYMC52_RS06195 (GYMC52_1199) - 1228908..1229156 (+) 249 WP_011230790.1 DUF3243 domain-containing protein -
  GYMC52_RS06200 (GYMC52_1201) - 1229585..1230865 (-) 1281 WP_012820465.1 IS110 family transposase -
  GYMC52_RS06205 (GYMC52_1202) - 1231059..1231850 (+) 792 WP_011230791.1 DUF3388 domain-containing protein -
  GYMC52_RS06210 (GYMC52_1203) - 1231878..1232771 (+) 894 WP_013145707.1 helix-turn-helix domain-containing protein -
  GYMC52_RS06215 (GYMC52_1204) pgsA 1232852..1233430 (+) 579 WP_011230793.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  GYMC52_RS06220 (GYMC52_1205) cinA 1233457..1234701 (+) 1245 WP_013523429.1 competence/damage-inducible protein A Machinery gene
  GYMC52_RS06225 (GYMC52_1206) - 1234880..1235248 (+) 369 Protein_1192 ATPase domain-containing protein -
  GYMC52_RS06230 (GYMC52_1207) - 1235962..1237869 (+) 1908 WP_013523431.1 group II intron reverse transcriptase -
  GYMC52_RS06235 (GYMC52_1208) recA 1237897..1238730 (+) 834 WP_013523432.1 recombinase RecA Machinery gene

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 44824.60 Da        Isoelectric Point: 6.0113

>NTDB_id=39369 GYMC52_RS06220 WP_013523429.1 1233457..1234701(+) (cinA) [Geobacillus sp. Y412MC52]
MNAEIIAVGSELLLGQIANTNAQFLSQQLAMLGINVYFHTVVGDNAGRLEQAVKTAQTRANLIIFTGGLGPTKDDLTKET
IARLLGRRLVIDEEALRAIEVYFARTNRPMTENNKKQALVLEGSTVLKNEHGMAPGMALVADGITYMLLPGPPKEMRPMF
KKYGNAFLRRTFSLSERIESRVLRFFGIGESALETAIADLIDAQSNPTIAPLAGDGEVTLRLTAKHQDEAEAKRLLDEVE
AAILARVGRHCYGYNDETLFTKTLERLKERGWTIASAESLTGGLFLEQLTAIPGASQVVQGGVVCYTNGVKEQVLGIPRP
LLEAEGAVSEPCARLLAENVRAMCDADIGISFTGVAGPDPLEGHPPGTVYIGIAVRGRDATVHRLTLSGTRDAIRIRTAK
YGCFFLLEMLAADC

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=39369 GYMC52_RS06220 WP_013523429.1 1233457..1234701(+) (cinA) [Geobacillus sp. Y412MC52]
TTGAACGCGGAGATCATTGCCGTTGGCTCCGAGCTGTTGCTTGGGCAAATCGCCAATACGAACGCCCAGTTTTTGTCGCA
GCAGCTGGCGATGCTTGGCATTAACGTCTATTTCCATACCGTCGTCGGCGACAACGCCGGCCGCCTCGAACAGGCGGTGA
AAACGGCGCAAACGAGAGCGAACCTCATCATTTTCACCGGCGGCCTCGGCCCGACGAAAGACGATTTAACGAAGGAGACG
ATCGCCCGTTTGCTTGGCCGCCGGCTCGTGATCGACGAGGAAGCGCTCCGAGCGATTGAGGTGTATTTTGCCCGCACAAA
CCGGCCGATGACAGAAAACAATAAAAAGCAGGCGCTCGTCTTGGAAGGATCGACGGTGCTGAAAAACGAGCACGGCATGG
CGCCAGGGATGGCGCTTGTGGCAGACGGCATTACGTACATGCTGCTGCCCGGGCCGCCGAAAGAAATGCGGCCGATGTTC
AAAAAATACGGAAACGCCTTTTTGCGCCGTACGTTTTCGCTTTCCGAGCGCATCGAGTCGCGCGTGCTCCGCTTTTTTGG
CATCGGTGAATCAGCGCTCGAGACGGCGATTGCGGATTTGATCGACGCCCAGTCGAATCCGACGATCGCGCCGCTGGCCG
GCGACGGTGAAGTGACGCTTCGTCTGACAGCGAAGCATCAGGATGAGGCGGAGGCGAAGCGGCTTCTTGACGAAGTGGAA
GCGGCCATTTTGGCGCGCGTCGGCCGCCACTGCTACGGATATAACGATGAAACGTTGTTTACAAAGACGCTCGAGCGGTT
AAAAGAAAGAGGATGGACGATCGCGTCGGCCGAAAGTTTGACCGGCGGCCTTTTCCTCGAACAGCTCACCGCCATCCCCG
GCGCGTCGCAAGTCGTGCAGGGCGGTGTCGTCTGCTACACAAACGGCGTCAAAGAACAGGTGCTTGGCATACCGCGCCCG
CTGCTTGAGGCAGAAGGGGCGGTGAGCGAGCCGTGCGCCCGTTTGCTTGCTGAAAACGTCCGCGCGATGTGCGATGCGGA
TATCGGCATCAGCTTCACCGGCGTCGCCGGACCCGATCCGCTTGAGGGCCACCCGCCCGGCACCGTGTATATCGGCATCG
CCGTCCGCGGGCGCGATGCGACTGTCCACCGTCTGACGCTGTCCGGCACGCGTGATGCCATTCGCATCCGCACCGCCAAA
TACGGCTGTTTTTTTCTGCTTGAGATGCTCGCGGCCGACTGCTGA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-167)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(258-409)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0E0TAL2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

59.902

98.792

0.592
  cinA Streptococcus mitis SK321

50.914

92.512

0.471
  cinA Streptococcus mitis NCTC 12261

50.914

92.512

0.471
  cinA Streptococcus pneumoniae TIGR4

50.392

92.512

0.466
  cinA Streptococcus pneumoniae Rx1

50.392

92.512

0.466
  cinA Streptococcus pneumoniae R6

50.392

92.512

0.466
  cinA Streptococcus pneumoniae D39

50.131

92.512

0.464
  cinA Streptococcus mutans UA159

47.87

96.377

0.461
  cinA Streptococcus suis isolate S10

42.593

91.304

0.389

Multiple sequence alignment