Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   GCU48_RS21335 Genome accession   NZ_CP045298
Coordinates   4473395..4474456 (+) Length   353 a.a.
NCBI ID   WP_025719904.1    Uniprot ID   -
Organism   Paenibacillus brasilensis strain KACC 13842     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4468395..4479456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GCU48_RS21315 - 4469013..4470104 (+) 1092 WP_152381370.1 RodZ family helix-turn-helix domain-containing protein -
  GCU48_RS27090 - 4470188..4470352 (+) 165 WP_167518738.1 hypothetical protein -
  GCU48_RS21320 - 4470499..4470990 (+) 492 WP_152381371.1 YajQ family cyclic di-GMP-binding protein -
  GCU48_RS21325 pgsA 4471201..4471788 (+) 588 WP_025719900.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  GCU48_RS21330 cinA 4471886..4473154 (+) 1269 WP_152381372.1 competence/damage-inducible protein A Machinery gene
  GCU48_RS21335 recA 4473395..4474456 (+) 1062 WP_025719904.1 recombinase RecA Machinery gene
  GCU48_RS21340 - 4474667..4475416 (+) 750 WP_152381373.1 RecX family transcriptional regulator -
  GCU48_RS21345 rny 4475791..4477335 (+) 1545 WP_013309958.1 ribonuclease Y -
  GCU48_RS21350 - 4477412..4478206 (+) 795 WP_025715730.1 TIGR00282 family metallophosphoesterase -
  GCU48_RS21355 - 4478336..4478596 (+) 261 WP_007430104.1 stage V sporulation protein S -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 38233.61 Da        Isoelectric Point: 5.0963

>NTDB_id=393235 GCU48_RS21335 WP_025719904.1 4473395..4474456(+) (recA) [Paenibacillus brasilensis strain KACC 13842]
MSDRRAALDMALRQIEKQFGKGSIMKLGESTHMQVETIPSGSIALDIALGTGGFPRGRIIEVYGPESSGKTTVALHAIAE
VQKTGGQAAFIDAEHALDPSYASKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQLREKVGVMFGNPETTPGGRALKFYSTVRLDVRRIESLKMGNDIVGNRT
RIKVVKNKVAPPFRQAEVDIMYGEGISKEGSLIDIGTEHDIVDKSGAWYSYEGERLGQGRENAKQFLKENPNIASTIEQK
IRVASNLITTVAPPTEEELAKEAKEEQELLELE

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=393235 GCU48_RS21335 WP_025719904.1 4473395..4474456(+) (recA) [Paenibacillus brasilensis strain KACC 13842]
TTGTCAGATCGTCGTGCTGCGCTGGATATGGCGCTCCGTCAAATAGAAAAGCAATTCGGTAAAGGTTCCATTATGAAGTT
GGGTGAGTCCACTCACATGCAAGTGGAAACGATCCCCAGTGGTTCAATTGCTTTGGATATTGCGTTAGGAACGGGCGGCT
TTCCAAGAGGCCGGATTATTGAAGTTTATGGACCGGAATCATCCGGTAAAACGACAGTAGCTCTTCATGCTATCGCAGAG
GTGCAAAAAACAGGCGGACAAGCCGCCTTTATCGATGCCGAGCATGCGCTTGATCCGTCGTATGCGAGCAAGCTGGGTGT
CAATATTGATGAACTGTTACTCTCACAACCAGATACAGGAGAACAGGCGCTGGAGATTGCCGAAGCTCTTGTACGTAGTG
GAGCAGTAGACATTATCGTCATTGACTCTGTAGCGGCACTTGTGCCGAAGGCAGAGATTGAAGGCGAAATGGGAGATTCC
CACGTCGGTCTTCAAGCACGCTTGATGTCGCAGGCATTGCGTAAGCTGTCTGGAGCCATTAATAAATCGAAAACCATTGC
TATCTTTATTAACCAGCTGCGTGAAAAAGTAGGCGTTATGTTCGGTAACCCTGAAACCACACCAGGTGGACGTGCATTGA
AGTTTTACTCAACAGTACGCTTGGATGTCCGCCGTATTGAAAGCTTGAAGATGGGGAACGACATTGTGGGTAACCGCACA
CGTATTAAAGTCGTGAAGAATAAAGTTGCCCCTCCTTTCCGTCAGGCGGAAGTGGACATTATGTACGGTGAGGGTATTTC
CAAAGAAGGCAGCTTGATCGACATCGGTACGGAGCATGACATTGTCGACAAGAGCGGAGCCTGGTATTCCTACGAGGGCG
AGCGCCTCGGTCAAGGACGTGAGAATGCGAAACAATTTTTGAAGGAAAATCCGAACATTGCTAGCACAATCGAGCAAAAA
ATTCGGGTGGCGAGTAATTTAATTACGACGGTTGCTCCACCGACAGAAGAAGAGTTGGCGAAGGAAGCTAAAGAAGAGCA
GGAATTGCTAGAGCTTGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

85.404

91.218

0.779
  recA Latilactobacillus sakei subsp. sakei 23K

71.386

96.034

0.686
  recA Streptococcus mitis NCTC 12261

66.476

98.867

0.657
  recA Streptococcus mitis SK321

66.189

98.867

0.654
  recA Streptococcus mutans UA159

65.714

99.15

0.652
  recA Streptococcus pneumoniae TIGR4

68.278

93.768

0.64
  recA Streptococcus pneumoniae Rx1

68.278

93.768

0.64
  recA Streptococcus pneumoniae D39

68.278

93.768

0.64
  recA Streptococcus pneumoniae R6

68.278

93.768

0.64
  recA Streptococcus pyogenes NZ131

68.615

92.068

0.632
  recA Lactococcus lactis subsp. cremoris KW2

67.069

93.768

0.629
  recA Acinetobacter baylyi ADP1

61.08

99.717

0.609
  recA Neisseria gonorrhoeae MS11

64.371

94.618

0.609
  recA Neisseria gonorrhoeae MS11

64.371

94.618

0.609
  recA Neisseria gonorrhoeae strain FA1090

64.371

94.618

0.609
  recA Vibrio cholerae strain A1552

66.875

90.652

0.606
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.875

90.652

0.606
  recA Acinetobacter baumannii D1279779

61.494

98.584

0.606
  recA Glaesserella parasuis strain SC1401

60.857

99.15

0.603
  recA Pseudomonas stutzeri DSM 10701

62.463

96.601

0.603
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.421

90.935

0.595
  recA Ralstonia pseudosolanacearum GMI1000

67.857

87.252

0.592
  recA Helicobacter pylori 26695

60.651

95.751

0.581
  recA Helicobacter pylori strain NCTC11637

60.355

95.751

0.578
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.963

92.351

0.572
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.752

91.501

0.547

Multiple sequence alignment