Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   GCU48_RS21330 Genome accession   NZ_CP045298
Coordinates   4471886..4473154 (+) Length   422 a.a.
NCBI ID   WP_152381372.1    Uniprot ID   -
Organism   Paenibacillus brasilensis strain KACC 13842     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4466886..4478154
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GCU48_RS21305 - 4467722..4467976 (+) 255 WP_025719894.1 DUF3243 domain-containing protein -
  GCU48_RS21310 - 4468207..4468980 (+) 774 WP_025719896.1 DUF3388 domain-containing protein -
  GCU48_RS21315 - 4469013..4470104 (+) 1092 WP_152381370.1 RodZ family helix-turn-helix domain-containing protein -
  GCU48_RS27090 - 4470188..4470352 (+) 165 WP_167518738.1 hypothetical protein -
  GCU48_RS21320 - 4470499..4470990 (+) 492 WP_152381371.1 YajQ family cyclic di-GMP-binding protein -
  GCU48_RS21325 pgsA 4471201..4471788 (+) 588 WP_025719900.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  GCU48_RS21330 cinA 4471886..4473154 (+) 1269 WP_152381372.1 competence/damage-inducible protein A Machinery gene
  GCU48_RS21335 recA 4473395..4474456 (+) 1062 WP_025719904.1 recombinase RecA Machinery gene
  GCU48_RS21340 - 4474667..4475416 (+) 750 WP_152381373.1 RecX family transcriptional regulator -
  GCU48_RS21345 rny 4475791..4477335 (+) 1545 WP_013309958.1 ribonuclease Y -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46417.41 Da        Isoelectric Point: 4.8322

>NTDB_id=393234 GCU48_RS21330 WP_152381372.1 4471886..4473154(+) (cinA) [Paenibacillus brasilensis strain KACC 13842]
MKAEIIAVGTELLLGQIVNTNAQYLSQELAAIGIDVYFQTVVGDNMDRLQEAVRLAQKRADIILFSGGLGPTQDDLTKDA
IAAVLGRKLHIDRLAMDKLEQFFRNRGVEMTENNRRQALSIEGATPLENETGLAIGDAIAQDGKFYVVLPGPPKELKPMF
ENQAKPWLLQQALSGKEMPIYSKMLKFAGIGESALETRLLDLIQSQTDPTIAPYAKEGEVTIRISTKAASESEALIKLTA
TEAEIQQRLSEHMYASEDVTLEKVIVDLMSKRGLTVSAAESCTGGMLMEHITSIPGSSVMFQGGIVCYSNEMKMKLLNVP
YDYLEGDHAPGAVSKEVALVLAEQARMVMDSDFGLSVTGVAGPGFSERKPVGLVYISIAERDKETEVYELNLSGNRETIR
LRSVKAILYRLWRRLVENEKLS

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=393234 GCU48_RS21330 WP_152381372.1 4471886..4473154(+) (cinA) [Paenibacillus brasilensis strain KACC 13842]
ATGAAAGCTGAAATCATCGCAGTAGGAACAGAATTATTGCTTGGACAAATCGTGAACACAAATGCTCAATATCTGTCCCA
AGAGTTGGCCGCAATCGGAATTGATGTATATTTTCAGACTGTAGTTGGCGATAACATGGATCGGCTTCAGGAAGCGGTAC
GGCTGGCTCAGAAGCGTGCAGATATTATTTTGTTTTCCGGTGGTTTGGGACCAACTCAGGATGATTTGACCAAAGATGCG
ATAGCTGCTGTACTCGGACGGAAATTGCACATAGATCGTCTTGCCATGGACAAGCTTGAACAGTTTTTCCGCAACCGTGG
GGTAGAAATGACCGAGAACAACCGCCGGCAGGCGCTTTCTATTGAAGGGGCTACCCCACTTGAAAATGAGACAGGGTTGG
CTATAGGGGATGCCATCGCGCAGGATGGTAAATTTTATGTGGTTTTACCTGGTCCTCCTAAGGAACTTAAACCGATGTTT
GAAAATCAAGCGAAGCCTTGGCTGCTTCAGCAGGCATTAAGCGGTAAGGAAATGCCGATTTATTCGAAAATGCTAAAATT
TGCAGGGATTGGTGAGTCCGCGCTGGAAACCCGGCTTCTAGATCTGATTCAATCTCAGACGGACCCGACGATTGCTCCTT
ATGCCAAGGAAGGGGAAGTCACGATCCGCATATCCACCAAGGCGGCTAGTGAAAGTGAAGCGTTAATCAAGCTGACGGCT
ACGGAAGCAGAGATTCAACAACGTCTTTCCGAACACATGTATGCAAGCGAGGATGTCACGCTGGAGAAGGTCATCGTGGA
TCTGATGTCCAAACGCGGGCTAACGGTTAGTGCTGCGGAAAGCTGTACAGGCGGGATGCTGATGGAACACATTACTTCCA
TACCGGGCAGCTCTGTAATGTTTCAAGGTGGCATCGTGTGTTATTCCAATGAAATGAAGATGAAGCTGCTTAACGTTCCT
TATGATTATTTGGAAGGGGATCATGCGCCCGGCGCAGTGAGCAAGGAAGTGGCCCTTGTGCTTGCAGAACAGGCAAGAAT
GGTCATGGACAGCGATTTCGGACTTTCAGTCACAGGTGTAGCCGGACCCGGATTTTCCGAACGAAAGCCTGTGGGCTTGG
TATATATCAGCATTGCTGAACGGGACAAGGAAACGGAAGTATATGAGCTGAATCTCAGCGGAAACCGTGAAACAATTCGT
CTGCGATCTGTCAAAGCAATCCTGTACAGATTGTGGCGAAGATTGGTGGAGAACGAGAAGCTCTCCTAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Damage-inducible protein CinA KH domain (CinA_KH)

(182-255)

Competence-damaged protein (CinA)

(260-414)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

49.756

97.156

0.483
  cinA Streptococcus pneumoniae TIGR4

49.512

97.156

0.481
  cinA Streptococcus mitis NCTC 12261

49.268

97.156

0.479
  cinA Streptococcus pneumoniae Rx1

49.268

97.156

0.479
  cinA Streptococcus pneumoniae R6

49.268

97.156

0.479
  cinA Streptococcus pneumoniae D39

49.024

97.156

0.476
  cinA Bacillus subtilis subsp. subtilis str. 168

48.515

95.735

0.464
  cinA Streptococcus mutans UA159

44.706

100

0.45
  cinA Streptococcus suis isolate S10

43.864

90.758

0.398

Multiple sequence alignment