Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   GC090_RS04710 Genome accession   NZ_CP045241
Coordinates   982253..983323 (+) Length   356 a.a.
NCBI ID   WP_006120721.1    Uniprot ID   A0A9Q6N2H1
Organism   Pantoea sp. JZ29     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 977253..988323
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GC090_RS04690 (GC090_04740) mltB 979086..980174 (+) 1089 WP_058708939.1 lytic murein transglycosylase B -
  GC090_RS04695 (GC090_04745) - 980250..980585 (+) 336 WP_006120723.1 zinc ribbon domain-containing protein YjdM -
  GC090_RS04700 (GC090_04750) tam 980781..981557 (+) 777 WP_324020967.1 trans-aconitate 2-methyltransferase -
  GC090_RS04705 (GC090_04755) pncC 981663..982157 (+) 495 WP_058708937.1 nicotinamide-nucleotide amidase -
  GC090_RS04710 (GC090_04760) recA 982253..983323 (+) 1071 WP_006120721.1 recombinase RecA Machinery gene
  GC090_RS04715 (GC090_04765) - 983438..983950 (+) 513 WP_080752857.1 regulatory protein RecX -
  GC090_RS04720 (GC090_04770) alaS 984082..986709 (+) 2628 WP_324020969.1 alanine--tRNA ligase -
  GC090_RS04725 (GC090_04775) csrA 986959..987144 (+) 186 WP_006120718.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 38030.42 Da        Isoelectric Point: 4.8643

>NTDB_id=392891 GC090_RS04710 WP_006120721.1 982253..983323(+) (recA) [Pantoea sp. JZ29]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPEASGKTTLTLQV
IAAAQRKGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDNVVG
SETRVKVVKNKIAAPFKQAEFQIMYGEGINTFGELVDLGVKHKLIEKAGAWYSYKGDKIGQGKANASNFLKENAAVANEI
DLKLRDMLLNGAEQNDAADFSADDVENAASEANEDY

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=392891 GC090_RS04710 WP_006120721.1 982253..983323(+) (recA) [Pantoea sp. JZ29]
ATGGCAATTGATGAAAACAAACAGAAGGCTTTAGCTGCCGCGCTCGGCCAGATTGAGAAGCAATTTGGTAAAGGCTCCAT
CATGCGCTTGGGTGAAGACCGCTCAATGGATGTGGAAACCATCTCAACAGGCTCCCTGTCACTGGATATCGCATTAGGTG
CGGGTGGATTGCCGATGGGCCGTATCGTCGAGATCTACGGTCCTGAAGCCTCGGGTAAAACCACGCTGACGCTGCAGGTG
ATTGCCGCCGCACAGCGTAAAGGTAAAACCTGTGCCTTTATCGATGCTGAACACGCACTGGATCCGGTCTACGCCAAGAA
ACTGGGCGTTGATATCGATAACCTGCTGTGTTCACAGCCCGATACGGGTGAACAGGCGCTGGAAATCTGTGACGCGCTGG
CGCGCTCCGGTGCCGTTGACGTGATTATCGTCGACTCCGTTGCTGCCCTGACACCAAAAGCCGAAATTGAAGGCGAAATC
GGTGACTCACATATGGGCCTGGCGGCGCGTATGATGAGCCAGGCGATGCGTAAGCTGGCCGGTAACCTGAAACAGTCGAA
TACGCTGCTGATCTTCATCAACCAGATTCGTATGAAAATTGGTGTGATGTTCGGTAATCCGGAAACCACCACCGGCGGTA
ACGCACTGAAGTTCTACGCGTCAGTTCGCCTTGATATCCGCCGTATTGGCGCCATCAAAGAGGGTGATAACGTCGTCGGT
AGTGAAACCCGCGTTAAAGTGGTTAAGAACAAAATTGCTGCGCCCTTTAAGCAGGCTGAGTTCCAGATCATGTATGGCGA
AGGGATCAACACCTTTGGCGAGCTGGTAGACCTCGGTGTGAAGCACAAGCTGATTGAAAAAGCGGGTGCCTGGTACAGCT
ATAAAGGCGATAAAATTGGTCAGGGTAAGGCAAACGCCAGCAACTTCCTCAAGGAAAATGCGGCTGTCGCGAACGAAATT
GACCTGAAACTGCGCGACATGTTGCTCAACGGCGCTGAGCAAAACGACGCAGCGGACTTCTCCGCTGACGACGTTGAGAA
TGCAGCCAGCGAAGCAAACGAAGACTATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

82.521

98.034

0.809
  recA Vibrio cholerae O1 biovar El Tor strain E7946

82.521

98.034

0.809
  recA Pseudomonas stutzeri DSM 10701

72.141

95.787

0.691
  recA Acinetobacter baumannii D1279779

72.024

94.382

0.68
  recA Acinetobacter baylyi ADP1

71.131

94.382

0.671
  recA Glaesserella parasuis strain SC1401

71.296

91.011

0.649
  recA Neisseria gonorrhoeae MS11

67.066

93.82

0.629
  recA Neisseria gonorrhoeae MS11

67.066

93.82

0.629
  recA Neisseria gonorrhoeae strain FA1090

67.066

93.82

0.629
  recA Ralstonia pseudosolanacearum GMI1000

69.775

87.36

0.61
  recA Streptococcus mitis SK321

60.58

96.91

0.587
  recA Streptococcus pneumoniae TIGR4

58.592

99.719

0.584
  recA Streptococcus mitis NCTC 12261

58.592

99.719

0.584
  recA Streptococcus pneumoniae Rx1

58.592

99.719

0.584
  recA Streptococcus pneumoniae D39

58.592

99.719

0.584
  recA Streptococcus pneumoniae R6

58.592

99.719

0.584
  recA Helicobacter pylori strain NCTC11637

59.942

97.472

0.584
  recA Helicobacter pylori 26695

59.654

97.472

0.581
  recA Lactococcus lactis subsp. cremoris KW2

62.539

90.73

0.567
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.696

89.607

0.562
  recA Bacillus subtilis subsp. subtilis str. 168

62.305

90.169

0.562
  recA Latilactobacillus sakei subsp. sakei 23K

61.538

91.292

0.562
  recA Streptococcus mutans UA159

61.231

91.292

0.559
  recA Streptococcus pyogenes NZ131

61.231

91.292

0.559
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

58.735

93.258

0.548
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.937

89.045

0.534

Multiple sequence alignment