Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HFELIS_RS04505 Genome accession   NC_014810
Coordinates   884849..885862 (-) Length   337 a.a.
NCBI ID   WP_013469351.1    Uniprot ID   E7AC98
Organism   Helicobacter felis ATCC 49179     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 879849..890862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HFELIS_RS04485 (HFELIS_08970) - 881449..882357 (-) 909 WP_013469347.1 RNA pseudouridine synthase -
  HFELIS_RS04490 (HFELIS_08980) - 882357..883979 (-) 1623 WP_013469348.1 CTP synthase -
  HFELIS_RS04495 (HFELIS_08990) - 883992..884588 (-) 597 WP_013469349.1 AMIN domain-containing protein -
  HFELIS_RS04500 (HFELIS_09000) - 884588..884839 (-) 252 WP_013469350.1 hypothetical protein -
  HFELIS_RS04505 (HFELIS_09010) recA 884849..885862 (-) 1014 WP_013469351.1 recombinase RecA Machinery gene
  HFELIS_RS04510 (HFELIS_09030) thrS 886145..887983 (+) 1839 WP_013469353.1 threonine--tRNA ligase -
  HFELIS_RS04515 (HFELIS_09040) infC 887995..888492 (+) 498 WP_197531894.1 translation initiation factor IF-3 -
  HFELIS_RS04520 (HFELIS_09050) rpmI 888514..888708 (+) 195 WP_013469355.1 50S ribosomal protein L35 -
  HFELIS_RS04525 (HFELIS_09060) rplT 888785..889135 (+) 351 WP_013469356.1 50S ribosomal protein L20 -

Sequence

Protein


Download         Length: 337 a.a.        Molecular weight: 36801.42 Da        Isoelectric Point: 6.3723

>NTDB_id=39176 HFELIS_RS04505 WP_013469351.1 884849..885862(-) (recA) [Helicobacter felis ATCC 49179]
MDEQKQKALDLAIRQIDKTFGKGALMRWGDKEIEPIEATSTGSLGLDMALGIGGVPRGRIIEIYGPESSGKTTLTLHVIA
QAQKEGGVCAFIDAEHALDVEYAKKLGVDVDNLLISQPDTGEEALEILETLARSGAVDVIAVDSVAALTPRAEIEGDMGD
QHVGLQARLMSQALRKITGVLHKMNTTLIFINQIRMKIGMMGYGSPETTTGGNALKFYASVRLDIRRIATLKQNDQSIGN
RVKVKVVKNKVAPPFKEAEFDVIYGEGISRVGELIDYGVKLEIVEKNGAWFSYQDKKLGQGKEASRLLLKENPELALEIE
AKIKEKLHFSQKTPSLS

Nucleotide


Download         Length: 1014 bp        

>NTDB_id=39176 HFELIS_RS04505 WP_013469351.1 884849..885862(-) (recA) [Helicobacter felis ATCC 49179]
ATGGACGAACAAAAACAAAAAGCCTTAGACTTGGCCATCAGACAAATTGATAAAACCTTTGGCAAGGGTGCGTTGATGCG
TTGGGGGGATAAAGAAATTGAGCCTATTGAGGCCACTTCTACGGGCTCTTTGGGTTTAGATATGGCGCTAGGTATTGGGG
GTGTGCCTAGGGGGCGCATCATAGAAATTTATGGCCCTGAATCAAGTGGAAAAACAACACTCACTTTGCATGTCATTGCA
CAAGCGCAAAAAGAGGGAGGAGTCTGCGCCTTTATTGATGCCGAACATGCCCTAGATGTCGAATATGCCAAGAAGCTAGG
CGTGGATGTGGATAATTTGCTCATCTCTCAGCCAGATACCGGTGAAGAAGCCCTAGAGATTTTAGAAACTCTAGCGCGCA
GTGGAGCCGTGGATGTGATCGCGGTAGATTCTGTAGCCGCACTCACTCCCCGCGCGGAGATCGAGGGAGATATGGGAGAT
CAACATGTGGGTTTGCAAGCGCGCTTGATGAGTCAGGCCTTGCGCAAGATCACGGGCGTATTACACAAAATGAACACTAC
TCTTATTTTTATCAACCAAATCCGCATGAAAATTGGCATGATGGGCTATGGTAGTCCAGAAACCACCACCGGGGGCAATG
CGTTAAAATTCTACGCTAGTGTGCGCTTGGATATTCGCCGTATCGCTACCCTCAAGCAAAACGATCAATCTATAGGCAAT
CGCGTCAAAGTAAAGGTTGTTAAAAATAAAGTCGCTCCGCCTTTCAAAGAGGCAGAATTTGATGTGATCTATGGCGAGGG
GATTAGCCGTGTTGGCGAGTTGATTGATTACGGAGTGAAATTGGAGATTGTGGAGAAAAATGGCGCATGGTTTAGTTACC
AAGATAAAAAATTAGGGCAGGGCAAGGAAGCTTCTAGGTTGCTACTCAAAGAAAATCCAGAATTAGCCCTAGAAATTGAA
GCAAAGATTAAAGAAAAATTGCATTTTTCTCAGAAAACCCCATCTCTCTCTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E7AC98

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Helicobacter pylori strain NCTC11637

79.817

97.033

0.774
  recA Helicobacter pylori 26695

79.511

97.033

0.772
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

76.758

97.033

0.745
  recA Pseudomonas stutzeri DSM 10701

67.584

97.033

0.656
  recA Acinetobacter baylyi ADP1

67.278

97.033

0.653
  recA Acinetobacter baumannii D1279779

67.278

97.033

0.653
  recA Neisseria gonorrhoeae MS11

64.793

100

0.65
  recA Neisseria gonorrhoeae MS11

64.793

100

0.65
  recA Neisseria gonorrhoeae strain FA1090

64.793

100

0.65
  recA Vibrio cholerae strain A1552

66.055

97.033

0.641
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.055

97.033

0.641
  recA Glaesserella parasuis strain SC1401

66.154

96.439

0.638
  recA Ralstonia pseudosolanacearum GMI1000

68.59

92.582

0.635
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.264

98.813

0.635
  recA Bacillus subtilis subsp. subtilis str. 168

62.769

96.439

0.605
  recA Streptococcus pyogenes NZ131

59.574

97.626

0.582
  recA Streptococcus mutans UA159

58.896

96.736

0.57
  recA Streptococcus pneumoniae Rx1

58.232

97.329

0.567
  recA Streptococcus pneumoniae D39

58.232

97.329

0.567
  recA Streptococcus pneumoniae R6

58.232

97.329

0.567
  recA Streptococcus pneumoniae TIGR4

58.232

97.329

0.567
  recA Streptococcus mitis SK321

58.769

96.439

0.567
  recA Streptococcus mitis NCTC 12261

58.769

96.439

0.567
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.006

95.549

0.564
  recA Latilactobacillus sakei subsp. sakei 23K

57.012

97.329

0.555
  recA Lactococcus lactis subsp. cremoris KW2

57.538

96.439

0.555

Multiple sequence alignment