Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LM596_RS03625 Genome accession   NZ_CP045035
Coordinates   781858..782898 (+) Length   346 a.a.
NCBI ID   WP_003688034.1    Uniprot ID   J1F4V7
Organism   Liquorilactobacillus mali strain LM596     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 776858..787898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LM596_RS03605 (LM596_03605) ymfI 778055..778780 (+) 726 WP_010077676.1 elongation factor P 5-aminopentanone reductase -
  LM596_RS03610 (LM596_03610) - 778871..779791 (+) 921 WP_003688038.1 helix-turn-helix domain-containing protein -
  LM596_RS03615 (LM596_03615) pgsA 779839..780426 (+) 588 WP_003688037.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LM596_RS03620 (LM596_03620) cinA 780519..781757 (+) 1239 WP_003688035.1 competence/damage-inducible protein A Machinery gene
  LM596_RS03625 (LM596_03625) recA 781858..782898 (+) 1041 WP_003688034.1 recombinase RecA Machinery gene
  LM596_RS03630 (LM596_03630) - 783069..783791 (+) 723 WP_003688033.1 Crp/Fnr family transcriptional regulator -
  LM596_RS03635 (LM596_03635) argR 783866..784330 (+) 465 WP_003688032.1 arginine repressor -
  LM596_RS03640 (LM596_03640) - 784439..786559 (+) 2121 WP_003688031.1 PBP1A family penicillin-binding protein -
  LM596_RS03645 (LM596_03645) - 786632..786970 (+) 339 WP_003688030.1 YlbF family regulator -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37206.35 Da        Isoelectric Point: 4.7712

>NTDB_id=391406 LM596_RS03625 WP_003688034.1 781858..782898(+) (recA) [Liquorilactobacillus mali strain LM596]
MADERQAALDAALKKIEKNFGKGSIMRMGEKADTQISTVSSGSLALDEALGVGGYPRGRIVEVYGPESSGKTTVALHAVA
EVQSNGGVAAYIDAENALDPAYATKLGVNIDELLLSQPDTGEQGLEIADALVSSGAIDIVVIDSVAALVPRAEIEGEMGD
AHVGLQARLMSQALRKLSGTINKTKTIAIFINQIREKVGVMFGNPEITPGGRALKFYSTVRLEVRRAEQIKDGTEIIGNR
VKIKVVKNKVAPPFKRAEVDIMYGEGISKTGELVDMAVEKDIIKKSGSWYSYGEDRIGQGRENAKQYLADNPEVMHEIML
KVRQAYGIADEGETAEISTELPLDNE

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=391406 LM596_RS03625 WP_003688034.1 781858..782898(+) (recA) [Liquorilactobacillus mali strain LM596]
TTGGCTGATGAACGACAAGCAGCTCTTGATGCTGCGTTGAAAAAGATAGAAAAGAATTTTGGCAAGGGATCGATTATGCG
TATGGGCGAAAAGGCCGATACACAAATTTCAACAGTTTCAAGTGGCTCACTTGCACTTGATGAAGCTCTTGGCGTCGGCG
GATATCCTCGTGGGAGAATCGTTGAAGTCTACGGACCTGAAAGCTCAGGTAAAACGACAGTGGCACTTCATGCTGTTGCC
GAAGTTCAAAGTAATGGCGGTGTGGCAGCGTATATTGATGCTGAGAATGCGTTGGATCCAGCTTATGCGACAAAGCTAGG
TGTCAATATTGATGAATTGCTTCTTTCACAGCCAGATACTGGTGAACAAGGATTAGAGATTGCGGACGCACTTGTTTCTT
CAGGTGCGATTGACATTGTCGTTATCGATTCTGTTGCAGCTTTGGTTCCCCGTGCTGAAATTGAAGGCGAAATGGGTGAT
GCTCATGTTGGCTTACAAGCAAGATTGATGTCACAAGCGTTACGTAAATTGTCTGGGACTATTAACAAAACAAAAACGAT
TGCGATTTTTATTAACCAAATTCGTGAAAAAGTCGGAGTTATGTTTGGTAATCCAGAAATTACACCGGGTGGTCGTGCAC
TTAAGTTTTATTCAACTGTTCGTCTGGAAGTCAGGAGAGCTGAACAGATAAAAGATGGAACTGAAATTATAGGTAACCGT
GTAAAAATAAAAGTTGTAAAGAACAAGGTTGCTCCACCCTTTAAACGTGCGGAAGTTGACATTATGTACGGTGAAGGAAT
TTCAAAAACTGGTGAGCTTGTTGATATGGCAGTTGAAAAAGATATTATTAAGAAAAGTGGTTCTTGGTATTCTTATGGTG
AAGATCGAATTGGTCAAGGCAGAGAGAATGCAAAACAATATTTAGCAGATAACCCTGAAGTTATGCACGAAATTATGTTG
AAAGTAAGACAGGCATATGGAATTGCAGATGAAGGAGAAACTGCTGAAATTTCAACTGAACTACCACTGGATAATGAATA
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J1F4V7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

86.982

97.688

0.85
  recA Bacillus subtilis subsp. subtilis str. 168

77.711

95.954

0.746
  recA Streptococcus mitis SK321

71.598

97.688

0.699
  recA Streptococcus mitis NCTC 12261

71.302

97.688

0.697
  recA Streptococcus pneumoniae Rx1

70.381

98.555

0.694
  recA Streptococcus pneumoniae D39

70.381

98.555

0.694
  recA Streptococcus pneumoniae R6

70.381

98.555

0.694
  recA Streptococcus pneumoniae TIGR4

70.381

98.555

0.694
  recA Streptococcus mutans UA159

70.294

98.266

0.691
  recA Streptococcus pyogenes NZ131

71.084

95.954

0.682
  recA Lactococcus lactis subsp. cremoris KW2

69.643

97.11

0.676
  recA Neisseria gonorrhoeae strain FA1090

62.428

100

0.624
  recA Neisseria gonorrhoeae MS11

62.428

100

0.624
  recA Neisseria gonorrhoeae MS11

62.428

100

0.624
  recA Ralstonia pseudosolanacearum GMI1000

64.038

91.618

0.587
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.772

98.844

0.581
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.846

93.931

0.581
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.28

94.798

0.581
  recA Vibrio cholerae strain A1552

60.802

93.642

0.569
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.802

93.642

0.569
  recA Acinetobacter baylyi ADP1

60.802

93.642

0.569
  recA Glaesserella parasuis strain SC1401

60.748

92.775

0.564
  recA Acinetobacter baumannii D1279779

59.877

93.642

0.561
  recA Pseudomonas stutzeri DSM 10701

59.752

93.353

0.558
  recA Helicobacter pylori strain NCTC11637

58.182

95.376

0.555
  recA Helicobacter pylori 26695

58.182

95.376

0.555

Multiple sequence alignment