Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   LM596_RS03620 Genome accession   NZ_CP045035
Coordinates   780519..781757 (+) Length   412 a.a.
NCBI ID   WP_003688035.1    Uniprot ID   J0UTZ3
Organism   Liquorilactobacillus mali strain LM596     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 775519..786757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LM596_RS03600 (LM596_03600) yfmH 776754..778055 (+) 1302 WP_003688043.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  LM596_RS03605 (LM596_03605) ymfI 778055..778780 (+) 726 WP_010077676.1 elongation factor P 5-aminopentanone reductase -
  LM596_RS03610 (LM596_03610) - 778871..779791 (+) 921 WP_003688038.1 helix-turn-helix domain-containing protein -
  LM596_RS03615 (LM596_03615) pgsA 779839..780426 (+) 588 WP_003688037.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LM596_RS03620 (LM596_03620) cinA 780519..781757 (+) 1239 WP_003688035.1 competence/damage-inducible protein A Machinery gene
  LM596_RS03625 (LM596_03625) recA 781858..782898 (+) 1041 WP_003688034.1 recombinase RecA Machinery gene
  LM596_RS03630 (LM596_03630) - 783069..783791 (+) 723 WP_003688033.1 Crp/Fnr family transcriptional regulator -
  LM596_RS03635 (LM596_03635) argR 783866..784330 (+) 465 WP_003688032.1 arginine repressor -
  LM596_RS03640 (LM596_03640) - 784439..786559 (+) 2121 WP_003688031.1 PBP1A family penicillin-binding protein -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 44953.07 Da        Isoelectric Point: 5.0045

>NTDB_id=391405 LM596_RS03620 WP_003688035.1 780519..781757(+) (cinA) [Liquorilactobacillus mali strain LM596]
MHAEIIAVGTEILLGQIVNTNATFVAKRLADMGIDVYFESVVGDNEGRLLGEVKRAASRSELVILIGGLGPTKDDLTKQT
VAEFLGKDLVEDEAAMAKITRYYAETGKTMTENNKIQALYIQDSIALKNETGFAVGNYFKNANGTDFLLLPGPPSEMKPM
FAHQAQPRLQETYFNDHRLFSRVLRFFGIGESMLVTKLADLIDGQSNPTIAPYAKTSEVTLRLTASSETEAVAKKMLDEL
ENEINERVGEFMYGYGDDNSLVAVVVDQLKKSKLTIAAAESLTAGKFQSTLGSVPGVSTVFYGGVVTYSNQTKEHLLGVS
HETLENEGAVSEQTAKEMADSVREKLGTDIGISFTGVAGPTELEGQPVGTVWIGLAMKGQKTTAKLYHFSSNRYFIRERA
VLSGLDYIRRSL

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=391405 LM596_RS03620 WP_003688035.1 780519..781757(+) (cinA) [Liquorilactobacillus mali strain LM596]
ATGCATGCAGAAATAATCGCGGTTGGAACAGAGATTCTCTTAGGACAGATTGTTAATACTAATGCTACTTTTGTTGCAAA
AAGGTTGGCAGACATGGGGATTGATGTTTATTTTGAATCTGTAGTTGGAGATAATGAAGGACGTCTTTTAGGTGAGGTTA
AGAGGGCTGCCTCTAGGAGTGAGCTTGTAATTTTGATAGGAGGGCTTGGACCGACAAAAGATGATTTAACAAAACAAACT
GTTGCAGAGTTTTTAGGAAAAGATCTTGTTGAAGATGAAGCAGCGATGGCTAAAATTACGCGCTATTATGCTGAAACTGG
AAAAACAATGACTGAGAACAACAAAATACAAGCACTTTATATTCAAGATTCTATTGCTTTAAAAAACGAAACTGGATTTG
CAGTAGGAAATTATTTTAAGAATGCAAATGGAACGGATTTTTTGTTGTTGCCTGGTCCGCCTAGTGAAATGAAACCAATG
TTCGCTCATCAAGCACAGCCAAGACTGCAAGAGACTTATTTTAATGATCATCGATTATTTTCAAGAGTATTACGCTTTTT
CGGAATAGGTGAGTCAATGTTGGTTACAAAATTAGCTGATTTAATTGATGGACAATCTAATCCGACGATTGCACCATATG
CAAAAACCAGCGAGGTTACTTTGAGGTTAACGGCAAGTAGTGAAACAGAAGCTGTTGCTAAAAAAATGTTAGATGAACTA
GAGAACGAGATAAATGAACGTGTTGGTGAATTTATGTATGGATACGGCGACGATAATAGTTTGGTCGCAGTTGTAGTGGA
TCAATTAAAAAAAAGCAAACTGACAATTGCAGCTGCAGAGAGTCTCACTGCTGGTAAATTTCAATCTACTCTAGGAAGTG
TTCCTGGTGTTTCAACTGTGTTTTATGGTGGAGTAGTCACTTATTCAAACCAAACTAAGGAACATTTGTTAGGTGTTTCT
CATGAGACATTAGAAAATGAAGGAGCTGTGAGTGAACAAACAGCCAAAGAAATGGCTGATTCTGTAAGAGAAAAACTTGG
AACAGATATTGGAATTTCCTTTACCGGAGTTGCGGGTCCCACAGAATTAGAAGGACAACCAGTTGGAACGGTTTGGATAG
GTCTTGCAATGAAAGGTCAGAAAACAACTGCAAAGTTATATCATTTCTCAAGTAATCGCTATTTTATAAGAGAAAGAGCG
GTATTATCTGGTCTTGATTACATAAGAAGGTCTCTTTAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-170)

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)

Competence-damaged protein (CinA)

(259-411)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J0UTZ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus pneumoniae R6

51.429

100

0.524
  cinA Streptococcus pneumoniae TIGR4

51.429

100

0.524
  cinA Streptococcus pneumoniae Rx1

51.429

100

0.524
  cinA Streptococcus pneumoniae D39

51.19

100

0.522
  cinA Streptococcus mitis SK321

50.714

100

0.517
  cinA Streptococcus mitis NCTC 12261

50

100

0.51
  cinA Streptococcus mutans UA159

49.639

100

0.5
  cinA Bacillus subtilis subsp. subtilis str. 168

48.293

99.515

0.481
  cinA Streptococcus suis isolate S10

42.892

100

0.432

Multiple sequence alignment