Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   F7984_RS07205 Genome accession   NZ_CP044545
Coordinates   1461499..1462542 (+) Length   347 a.a.
NCBI ID   WP_066100261.1    Uniprot ID   A0A1B9B027
Organism   Pradoshia sp. D12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1456499..1467542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F7984_RS07180 (F7984_07180) ymfI 1456749..1457474 (+) 726 WP_066100280.1 elongation factor P 5-aminopentanone reductase -
  F7984_RS07185 (F7984_07185) - 1457589..1458383 (+) 795 WP_066100277.1 DUF3388 domain-containing protein -
  F7984_RS07190 (F7984_07190) - 1458402..1459289 (+) 888 WP_140461289.1 helix-turn-helix domain-containing protein -
  F7984_RS07195 (F7984_07195) pgsA 1459371..1459949 (+) 579 WP_066100270.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  F7984_RS07200 (F7984_07200) cinA 1459993..1461240 (+) 1248 WP_140461290.1 competence/damage-inducible protein A Machinery gene
  F7984_RS07205 (F7984_07205) recA 1461499..1462542 (+) 1044 WP_066100261.1 recombinase RecA Machinery gene
  F7984_RS07210 (F7984_07210) rny 1463078..1464637 (+) 1560 WP_066100258.1 ribonuclease Y -
  F7984_RS07215 (F7984_07215) - 1464749..1465546 (+) 798 WP_066100255.1 TIGR00282 family metallophosphoesterase -
  F7984_RS07220 (F7984_07220) spoVS 1465682..1465942 (+) 261 WP_066100252.1 stage V sporulation protein SpoVS -
  F7984_RS07225 (F7984_07225) - 1466062..1466982 (+) 921 WP_066100249.1 dipeptidase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37510.77 Da        Isoelectric Point: 4.9924

>NTDB_id=390909 F7984_RS07205 WP_066100261.1 1461499..1462542(+) (recA) [Pradoshia sp. D12]
MSERQAALDMALKQIEKQFGKGSVMKLGERADRKVSTIPSGSLALDSALGVGGYPRGRIIEIYGPESSGKTTVALHAIAE
VQAQGGQAAFIDAEHALDPAYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAIDIIVVDSVAALVPKAEIEGEMGDS
HMGLQARLMSQALRKLSGSINKSNTIAIFINQIREKIGVMFGNPETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNRT
KVKVVKNKVAPPFKVAELDIMYGEGISKEGEIIDIGSELDIIEKSGSWYSYNGDRLGQGRENAKLFLKENPDVRDEISIK
IRSAYGLNGEAKVVEAAEEMDKFDLPE

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=390909 F7984_RS07205 WP_066100261.1 1461499..1462542(+) (recA) [Pradoshia sp. D12]
GTGAGTGAACGTCAAGCTGCGCTCGATATGGCGCTAAAACAAATTGAAAAGCAATTTGGTAAAGGTTCAGTAATGAAGCT
GGGGGAAAGAGCAGACAGAAAGGTTTCTACCATTCCAAGTGGTTCGCTTGCTCTTGATTCAGCCCTCGGTGTGGGTGGAT
ATCCAAGAGGTAGAATAATTGAGATTTATGGACCGGAGAGTTCCGGTAAAACGACAGTAGCTTTACATGCAATTGCTGAA
GTACAGGCACAGGGTGGACAAGCAGCATTTATTGATGCAGAACATGCTTTAGATCCGGCATATGCACAAAAGCTTGGCGT
AAATATAGATGAATTATTACTTTCCCAACCAGATACAGGTGAACAGGCATTGGAAATTGCTGAGGCGCTTGTACGAAGTG
GTGCAATTGATATTATCGTTGTTGACTCAGTGGCTGCTTTAGTACCAAAAGCTGAGATTGAAGGTGAAATGGGAGATTCT
CATATGGGTCTACAAGCCCGTTTAATGTCTCAGGCTCTTCGTAAACTTTCTGGATCCATTAATAAATCTAACACCATAGC
AATCTTTATCAACCAAATCCGTGAGAAGATTGGTGTTATGTTTGGTAACCCAGAAACAACTCCAGGTGGTCGTGCTCTTA
AGTTCTATTCTACGGTTCGCCTTGAAGTAAGACGTGCAGAACAACTGAAACAGGGAAATGATATTGTAGGGAACAGGACT
AAAGTAAAGGTTGTTAAAAATAAAGTGGCTCCACCTTTCAAAGTGGCAGAACTTGATATTATGTATGGTGAGGGTATTTC
CAAAGAAGGAGAAATCATCGACATTGGTTCTGAATTGGATATTATTGAAAAGAGTGGGTCTTGGTACTCATATAATGGAG
ATCGCTTAGGACAGGGAAGAGAGAATGCGAAGCTCTTCTTAAAAGAAAATCCAGATGTTCGGGATGAAATTTCCATTAAA
ATCCGCTCAGCCTATGGATTAAACGGTGAAGCGAAAGTGGTTGAAGCAGCAGAGGAAATGGATAAATTTGATTTACCTGA
ATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B9B027

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

84.384

95.965

0.81
  recA Latilactobacillus sakei subsp. sakei 23K

76.687

93.948

0.72
  recA Streptococcus mitis SK321

69.298

98.559

0.683
  recA Streptococcus mutans UA159

68.103

100

0.683
  recA Streptococcus pyogenes NZ131

70.732

94.524

0.669
  recA Streptococcus pneumoniae R6

70.303

95.101

0.669
  recA Streptococcus pneumoniae TIGR4

70.303

95.101

0.669
  recA Streptococcus pneumoniae D39

70.303

95.101

0.669
  recA Streptococcus pneumoniae Rx1

70.303

95.101

0.669
  recA Streptococcus mitis NCTC 12261

70

95.101

0.666
  recA Lactococcus lactis subsp. cremoris KW2

66.964

96.83

0.648
  recA Vibrio cholerae strain A1552

63.037

100

0.634
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.037

100

0.634
  recA Neisseria gonorrhoeae MS11

64.776

96.542

0.625
  recA Neisseria gonorrhoeae strain FA1090

64.776

96.542

0.625
  recA Neisseria gonorrhoeae MS11

64.776

96.542

0.625
  recA Acinetobacter baumannii D1279779

63.05

98.271

0.62
  recA Helicobacter pylori 26695

62.865

98.559

0.62
  recA Helicobacter pylori strain NCTC11637

62.865

98.559

0.62
  recA Ralstonia pseudosolanacearum GMI1000

65.443

94.236

0.617
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.417

93.948

0.605
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.22

94.236

0.605
  recA Glaesserella parasuis strain SC1401

60.405

99.712

0.602
  recA Pseudomonas stutzeri DSM 10701

60.641

98.847

0.599
  recA Acinetobacter baylyi ADP1

64.577

91.931

0.594
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.92

93.084

0.576

Multiple sequence alignment