Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   F7984_RS07200 Genome accession   NZ_CP044545
Coordinates   1459993..1461240 (+) Length   415 a.a.
NCBI ID   WP_140461290.1    Uniprot ID   -
Organism   Pradoshia sp. D12     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1454993..1466240
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F7984_RS07175 (F7984_07175) yfmH 1455218..1456504 (+) 1287 WP_066100283.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  F7984_RS07180 (F7984_07180) ymfI 1456749..1457474 (+) 726 WP_066100280.1 elongation factor P 5-aminopentanone reductase -
  F7984_RS07185 (F7984_07185) - 1457589..1458383 (+) 795 WP_066100277.1 DUF3388 domain-containing protein -
  F7984_RS07190 (F7984_07190) - 1458402..1459289 (+) 888 WP_140461289.1 helix-turn-helix domain-containing protein -
  F7984_RS07195 (F7984_07195) pgsA 1459371..1459949 (+) 579 WP_066100270.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  F7984_RS07200 (F7984_07200) cinA 1459993..1461240 (+) 1248 WP_140461290.1 competence/damage-inducible protein A Machinery gene
  F7984_RS07205 (F7984_07205) recA 1461499..1462542 (+) 1044 WP_066100261.1 recombinase RecA Machinery gene
  F7984_RS07210 (F7984_07210) rny 1463078..1464637 (+) 1560 WP_066100258.1 ribonuclease Y -
  F7984_RS07215 (F7984_07215) - 1464749..1465546 (+) 798 WP_066100255.1 TIGR00282 family metallophosphoesterase -
  F7984_RS07220 (F7984_07220) spoVS 1465682..1465942 (+) 261 WP_066100252.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 415 a.a.        Molecular weight: 45823.68 Da        Isoelectric Point: 4.8908

>NTDB_id=390908 F7984_RS07200 WP_140461290.1 1459993..1461240(+) (cinA) [Pradoshia sp. D12]
MNAELIAVGSELLLGQIANTNAQFISKSLAEIGINVYYHTVVGDNPVRLKKAIEIAESRANLIIYTGGLGPTKDDITKEV
VAAHIGKTLITDQKAMENIEEYFKKIKRVMTENNRKQALVIGGSEVFPNQNGMAPGMVVSHGDILHILLPGPPSEMQPMH
QNFAVPYLLRLMDRVERIDSRVLRFFGIGESQLETDIEDLLDQQSNPTIAPLASDGEVTLRITAKHESIEEADKLLKETE
EKILSRVGEYFYGYDDATIMTELINLLKENELTISAAESLTGGMFQEKMTDIQGAGLILKGGIVVYTNEAKEKLLKVEQS
TIDQYGVVSEQCAMEMADNIKAMLQSDIGISFTGVAGPDELEGHPVGTVYIGIAISGQKTYAKRLDLGGMREVNRVRSMK
YGCHFLIRKLRELYA

Nucleotide


Download         Length: 1248 bp        

>NTDB_id=390908 F7984_RS07200 WP_140461290.1 1459993..1461240(+) (cinA) [Pradoshia sp. D12]
ATGAATGCAGAATTAATAGCGGTAGGCTCTGAGTTATTACTTGGACAGATTGCAAATACCAATGCTCAGTTTATATCAAA
AAGCCTGGCAGAGATAGGTATTAACGTATATTACCATACAGTAGTTGGGGATAATCCTGTACGATTAAAAAAGGCTATTG
AAATTGCAGAATCCCGAGCAAATCTCATAATATACACTGGTGGGTTGGGACCAACAAAGGATGATATAACAAAAGAAGTT
GTAGCTGCCCATATAGGTAAAACATTAATAACAGACCAAAAAGCTATGGAAAATATTGAAGAATATTTCAAGAAAATAAA
ACGGGTGATGACAGAAAACAACCGGAAGCAAGCATTGGTTATTGGAGGATCGGAAGTATTCCCTAATCAAAATGGAATGG
CTCCCGGAATGGTTGTGTCTCATGGGGATATTCTTCACATTTTATTACCAGGTCCTCCAAGTGAAATGCAGCCAATGCAT
CAAAATTTTGCAGTTCCTTATCTTTTGAGATTAATGGACAGGGTGGAGCGTATAGATTCCCGAGTCCTCCGTTTCTTTGG
TATTGGGGAATCACAGCTTGAAACAGATATAGAAGATTTACTGGATCAGCAAAGTAATCCGACAATAGCGCCTCTTGCCT
CAGATGGAGAGGTAACTCTTCGTATTACAGCTAAACATGAATCTATTGAAGAAGCTGACAAACTATTAAAAGAGACAGAA
GAAAAAATTCTTTCGCGTGTGGGAGAATATTTTTACGGATATGATGATGCGACTATTATGACTGAACTTATCAATCTTTT
AAAAGAAAATGAGCTTACAATATCGGCAGCAGAAAGCTTAACCGGCGGAATGTTTCAGGAAAAAATGACGGATATACAGG
GAGCCGGTTTAATCCTTAAGGGCGGTATTGTTGTTTATACCAATGAAGCAAAGGAAAAGCTTTTGAAGGTCGAACAATCA
ACCATCGACCAATATGGAGTTGTCAGTGAGCAATGTGCTATGGAAATGGCTGATAATATTAAAGCCATGCTCCAATCTGA
TATTGGGATTAGTTTTACTGGAGTAGCTGGACCAGATGAATTGGAAGGTCATCCGGTAGGGACTGTTTATATCGGTATAG
CCATTTCCGGTCAGAAAACGTACGCAAAGAGATTGGACTTAGGCGGTATGCGTGAGGTTAATCGGGTAAGAAGCATGAAG
TATGGCTGTCATTTTCTTATCCGAAAGTTGAGAGAGTTATATGCATAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Competence-damaged protein (CinA)

(258-409)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.537

98.795

0.578
  cinA Streptococcus mitis SK321

46.062

100

0.465
  cinA Streptococcus pneumoniae TIGR4

45.823

100

0.463
  cinA Streptococcus mitis NCTC 12261

45.823

100

0.463
  cinA Streptococcus pneumoniae Rx1

45.346

100

0.458
  cinA Streptococcus pneumoniae R6

45.346

100

0.458
  cinA Streptococcus pneumoniae D39

45.107

100

0.455
  cinA Streptococcus mutans UA159

44.888

96.627

0.434
  cinA Streptococcus suis isolate S10

39.949

94.699

0.378

Multiple sequence alignment