Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LPB220_RS10350 Genome accession   NZ_CP044230
Coordinates   2049735..2050880 (-) Length   381 a.a.
NCBI ID   WP_003002082.1    Uniprot ID   -
Organism   Streptococcus sp. LPB0220     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2044735..2055880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB220_RS10310 (LPB220_10315) - 2045352..2045762 (-) 411 WP_070589807.1 SP_0198 family lipoprotein -
  LPB220_RS10315 (LPB220_10320) - 2045839..2047071 (-) 1233 WP_150906725.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  LPB220_RS10325 (LPB220_10330) - 2047378..2047683 (-) 306 WP_003001941.1 DUF1292 domain-containing protein -
  LPB220_RS10330 (LPB220_10335) ruvX 2047706..2048125 (-) 420 WP_023919889.1 Holliday junction resolvase RuvX -
  LPB220_RS10335 (LPB220_10340) - 2048125..2048391 (-) 267 WP_003002070.1 IreB family regulatory phosphoprotein -
  LPB220_RS10340 (LPB220_10345) - 2048516..2049112 (-) 597 WP_150906727.1 SP0191 family lipoprotein -
  LPB220_RS10345 (LPB220_10350) spx 2049249..2049647 (-) 399 WP_150906729.1 transcriptional regulator Spx -
  LPB220_RS10350 (LPB220_10355) recA 2049735..2050880 (-) 1146 WP_003002082.1 recombinase RecA Machinery gene
  LPB220_RS10355 (LPB220_10360) cinA 2051001..2052269 (-) 1269 WP_150906731.1 competence/damage-inducible protein A Machinery gene
  LPB220_RS10365 (LPB220_10370) - 2052801..2053838 (+) 1038 WP_150906733.1 S66 peptidase family protein -
  LPB220_RS10370 (LPB220_10375) - 2053891..2054457 (-) 567 WP_150906735.1 DNA-3-methyladenine glycosylase I -
  LPB220_RS10375 (LPB220_10380) ruvA 2054467..2055060 (-) 594 WP_150906737.1 Holliday junction branch migration protein RuvA -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 41043.76 Da        Isoelectric Point: 4.8456

>NTDB_id=389012 LPB220_RS10350 WP_003002082.1 2049735..2050880(-) (recA) [Streptococcus sp. LPB0220]
MAKKQKKLDDISKKFGDEREKALNDALKLIEKDFGKGSIMRLGERAEQKVQVMSSGSLALDIALGAGGYPKGRIIEIYGP
ESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPSYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVA
ALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRG
NTQIKGTGDQKDTNVGKETKIKVVKNKVAPPFKEAMVEIMYGEGISRTGELVKIATDLDIIQKAGAWYSYNGEKIGQGSE
NAKKFLADHPEIFDEIDHKVRVHFGLIEEDEAVKTLDKTEEAAPVVEEVTLDLDDAIEIED

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=389012 LPB220_RS10350 WP_003002082.1 2049735..2050880(-) (recA) [Streptococcus sp. LPB0220]
ATGGCGAAAAAACAGAAAAAATTAGATGATATCTCTAAGAAATTTGGAGATGAGCGTGAAAAAGCGCTCAATGATGCCCT
GAAATTGATCGAAAAAGACTTTGGTAAGGGATCGATCATGCGTTTGGGGGAACGTGCAGAGCAAAAAGTACAAGTCATGA
GCTCTGGTTCCTTGGCGCTTGATATTGCCTTGGGTGCTGGTGGTTATCCAAAAGGTCGGATCATCGAAATCTATGGTCCA
GAATCATCTGGTAAAACAACCGTTGCCCTCCATGCAGTAGCGCAAGCACAGAAAGAAGGAGGCATTGCTGCCTTTATCGA
TGCGGAGCATGCCTTGGATCCATCTTATGCAGCAGCTCTCGGAGTCAATATCGACGAACTTCTCTTGTCTCAACCAGACT
CAGGGGAACAAGGACTTGAAATTGCTGGTAAATTGATCGACTCTGGTGCGGTTGATTTGGTGGTTGTCGACTCTGTTGCG
GCCTTGGTACCTCGTGCGGAAATCGATGGAGATATCGGGGATAGCCACGTTGGTTTGCAAGCGCGGATGATGAGCCAAGC
GATGCGTAAACTCGGAGCTTCGATCAATAAGACAAAGACCATTGCCATCTTTATCAACCAATTGCGTGAAAAAGTTGGGG
TCATGTTTGGGAACCCTGAAACCACACCTGGTGGTCGTGCCCTTAAATTCTACGCTTCTGTCCGTCTAGATGTTCGTGGA
AATACTCAAATCAAGGGGACTGGGGACCAAAAAGATACCAACGTTGGTAAGGAAACCAAGATCAAGGTTGTGAAGAACAA
GGTAGCTCCACCGTTCAAAGAAGCCATGGTCGAAATCATGTACGGGGAAGGAATTTCACGTACAGGTGAATTGGTGAAGA
TTGCAACAGATTTGGATATCATCCAAAAAGCGGGTGCGTGGTACTCATATAATGGCGAAAAAATTGGTCAAGGATCTGAA
AATGCTAAGAAATTCTTGGCTGACCACCCAGAAATTTTTGACGAAATCGACCACAAGGTTCGGGTTCATTTTGGTTTGAT
CGAAGAAGACGAAGCAGTGAAAACCCTTGATAAAACTGAAGAAGCAGCTCCTGTCGTAGAAGAAGTAACTCTAGATTTAG
ATGACGCGATTGAAATTGAAGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mitis NCTC 12261

90.601

100

0.911
  recA Streptococcus pneumoniae Rx1

88.889

100

0.903
  recA Streptococcus pneumoniae D39

88.889

100

0.903
  recA Streptococcus pneumoniae R6

88.889

100

0.903
  recA Streptococcus pneumoniae TIGR4

88.889

100

0.903
  recA Streptococcus mitis SK321

90.026

100

0.9
  recA Streptococcus mutans UA159

86.684

100

0.871
  recA Streptococcus pyogenes NZ131

87.139

100

0.871
  recA Lactococcus lactis subsp. cremoris KW2

78.286

91.864

0.719
  recA Latilactobacillus sakei subsp. sakei 23K

67.697

93.438

0.633
  recA Bacillus subtilis subsp. subtilis str. 168

69.301

86.352

0.598
  recA Vibrio cholerae strain A1552

59.829

92.126

0.551
  recA Vibrio cholerae O1 biovar El Tor strain E7946

59.829

92.126

0.551
  recA Glaesserella parasuis strain SC1401

60.882

89.239

0.543
  recA Acinetobacter baylyi ADP1

58.974

92.126

0.543
  recA Acinetobacter baumannii D1279779

59.884

90.289

0.541
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.777

84.777

0.541
  recA Neisseria gonorrhoeae MS11

61.934

86.877

0.538
  recA Neisseria gonorrhoeae strain FA1090

61.934

86.877

0.538
  recA Neisseria gonorrhoeae MS11

61.934

86.877

0.538
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.702

86.352

0.533
  recA Ralstonia pseudosolanacearum GMI1000

61.199

83.202

0.509
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.61

86.877

0.509
  recA Helicobacter pylori strain NCTC11637

57.186

87.664

0.501
  recA Helicobacter pylori 26695

57.186

87.664

0.501
  recA Pseudomonas stutzeri DSM 10701

57.927

86.089

0.499

Multiple sequence alignment