Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   TOCE_RS06060 Genome accession   NC_014377
Coordinates   1185559..1186590 (-) Length   343 a.a.
NCBI ID   WP_013276011.1    Uniprot ID   D9S3J5
Organism   Thermosediminibacter oceani DSM 16646     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1180559..1191590
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TOCE_RS12585 - 1181146..1181646 (+) 501 WP_245523105.1 helix-turn-helix domain-containing protein -
  TOCE_RS06040 (Toce_1211) - 1182173..1182847 (-) 675 WP_013276007.1 ATPase -
  TOCE_RS06045 (Toce_1212) - 1182861..1183097 (-) 237 WP_013276008.1 hypothetical protein -
  TOCE_RS06050 (Toce_1213) - 1183101..1184552 (-) 1452 WP_013276009.1 AAA family ATPase -
  TOCE_RS06055 (Toce_1214) - 1184553..1185557 (-) 1005 WP_013276010.1 metallophosphoesterase -
  TOCE_RS06060 (Toce_1215) recA 1185559..1186590 (-) 1032 WP_013276011.1 recombinase RecA Machinery gene
  TOCE_RS06065 (Toce_1216) thpR 1186649..1187203 (-) 555 WP_013276012.1 RNA 2',3'-cyclic phosphodiesterase -
  TOCE_RS12755 (Toce_1217) - 1187311..1187436 (-) 126 WP_013276013.1 hypothetical protein -
  TOCE_RS06070 (Toce_1218) cinA 1187446..1188678 (-) 1233 WP_013276014.1 competence/damage-inducible protein A Machinery gene
  TOCE_RS06075 (Toce_1219) - 1188731..1190218 (-) 1488 WP_013276015.1 AAA family ATPase -
  TOCE_RS06080 (Toce_1220) - 1190240..1190752 (-) 513 WP_148218394.1 hypothetical protein -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 36926.51 Da        Isoelectric Point: 6.8897

>NTDB_id=38001 TOCE_RS06060 WP_013276011.1 1185559..1186590(-) (recA) [Thermosediminibacter oceani DSM 16646]
MMEKQKALEMALAQIERQFGKGSIMRLGEAESKFNVEVIPTGALPLDIALGVGGVPRGRIIEIFGPESSGKTTVALHIVA
EAQKAGGTAAFIDAEHALDPTYARKLGVDTDNLLISQPDTGEQALEIAEALVRSGAVDVIVIDSVAALVPKAELEGEMGE
AHVGLQARLMSQALRKLAGSISKSKTVAIFINQLREKVGVMFGNPETTPGGRALKFYASVRMEVRKTSVIKDGENVVGTR
ASVKVVKNKVAPPFKSAEFDIMYGEGISREGCVLDFATEAGIIQKSGAWYSYEKERIGQGRENAKQYLKEHPEVLKAIEL
KVKEKFNLVKSESKKTEGTEEGA

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=38001 TOCE_RS06060 WP_013276011.1 1185559..1186590(-) (recA) [Thermosediminibacter oceani DSM 16646]
ATGATGGAAAAACAAAAGGCTCTGGAAATGGCCTTAGCCCAGATCGAAAGGCAATTTGGGAAAGGCTCTATAATGCGACT
GGGAGAAGCTGAATCCAAGTTCAACGTCGAGGTAATACCTACTGGAGCGCTTCCCCTTGACATAGCTCTAGGGGTAGGCG
GAGTTCCGCGAGGAAGAATAATAGAAATATTCGGCCCTGAATCCTCAGGTAAAACTACGGTGGCTTTACATATTGTAGCA
GAAGCCCAAAAGGCCGGCGGCACGGCGGCCTTTATCGACGCTGAACACGCCCTGGACCCGACATATGCCCGCAAGCTGGG
AGTCGATACGGATAATCTTCTCATTTCTCAACCGGATACCGGGGAACAAGCTCTGGAAATAGCGGAAGCTCTTGTGAGGA
GCGGCGCGGTGGATGTAATAGTAATAGATTCGGTAGCGGCGCTGGTACCCAAAGCTGAGTTGGAAGGGGAGATGGGAGAG
GCCCATGTAGGGCTCCAGGCCAGGTTGATGTCCCAGGCTTTGAGAAAACTAGCCGGTTCCATAAGCAAGTCCAAAACCGT
TGCAATATTTATCAACCAGCTCAGGGAAAAGGTGGGCGTGATGTTTGGCAATCCCGAGACCACGCCAGGAGGGAGGGCGC
TAAAATTTTACGCCTCGGTGCGCATGGAGGTCCGAAAGACGAGTGTAATTAAGGATGGCGAAAATGTAGTAGGAACTAGA
GCATCGGTAAAAGTAGTTAAAAATAAGGTGGCACCGCCGTTTAAAAGTGCCGAGTTTGATATTATGTATGGCGAAGGCAT
ATCAAGAGAGGGCTGTGTCCTCGACTTTGCCACAGAAGCGGGCATCATACAAAAAAGCGGTGCATGGTATTCTTATGAAA
AAGAACGTATAGGTCAGGGTCGTGAAAACGCCAAACAGTACTTAAAGGAGCACCCCGAAGTGCTGAAAGCCATTGAATTG
AAGGTAAAGGAAAAATTCAATCTTGTCAAGTCCGAATCCAAGAAAACAGAAGGTACCGAAGAAGGGGCGTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(6-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D9S3J5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

70.122

95.627

0.671
  recA Streptococcus pneumoniae TIGR4

66.181

100

0.662
  recA Streptococcus pneumoniae Rx1

66.181

100

0.662
  recA Streptococcus pneumoniae D39

66.181

100

0.662
  recA Streptococcus pneumoniae R6

66.181

100

0.662
  recA Streptococcus mitis SK321

65.698

100

0.659
  recA Streptococcus mitis NCTC 12261

64.841

100

0.656
  recA Latilactobacillus sakei subsp. sakei 23K

68.712

95.044

0.653
  recA Streptococcus pyogenes NZ131

66.565

95.918

0.638
  recA Lactococcus lactis subsp. cremoris KW2

65.861

96.501

0.636
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.85

100

0.624
  recA Vibrio cholerae strain A1552

61.85

100

0.624
  recA Streptococcus mutans UA159

63.69

97.959

0.624
  recA Neisseria gonorrhoeae MS11

62.537

98.834

0.618
  recA Neisseria gonorrhoeae MS11

62.537

98.834

0.618
  recA Neisseria gonorrhoeae strain FA1090

62.537

98.834

0.618
  recA Ralstonia pseudosolanacearum GMI1000

67.197

91.545

0.615
  recA Glaesserella parasuis strain SC1401

63.58

94.461

0.601
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.424

96.21

0.601
  recA Pseudomonas stutzeri DSM 10701

60.472

98.834

0.598
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.294

99.125

0.598
  recA Acinetobacter baylyi ADP1

60.355

98.542

0.595
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.551

93.586

0.595
  recA Acinetobacter baumannii D1279779

61.92

94.169

0.583
  recA Helicobacter pylori 26695

61.231

94.752

0.58
  recA Helicobacter pylori strain NCTC11637

61.231

94.752

0.58

Multiple sequence alignment