Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   TOCE_RS06070 Genome accession   NC_014377
Coordinates   1187446..1188678 (-) Length   410 a.a.
NCBI ID   WP_013276014.1    Uniprot ID   D9S3J8
Organism   Thermosediminibacter oceani DSM 16646     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1182446..1193678
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TOCE_RS06045 (Toce_1212) - 1182861..1183097 (-) 237 WP_013276008.1 hypothetical protein -
  TOCE_RS06050 (Toce_1213) - 1183101..1184552 (-) 1452 WP_013276009.1 AAA family ATPase -
  TOCE_RS06055 (Toce_1214) - 1184553..1185557 (-) 1005 WP_013276010.1 metallophosphoesterase -
  TOCE_RS06060 (Toce_1215) recA 1185559..1186590 (-) 1032 WP_013276011.1 recombinase RecA Machinery gene
  TOCE_RS06065 (Toce_1216) thpR 1186649..1187203 (-) 555 WP_013276012.1 RNA 2',3'-cyclic phosphodiesterase -
  TOCE_RS12755 (Toce_1217) - 1187311..1187436 (-) 126 WP_013276013.1 hypothetical protein -
  TOCE_RS06070 (Toce_1218) cinA 1187446..1188678 (-) 1233 WP_013276014.1 competence/damage-inducible protein A Machinery gene
  TOCE_RS06075 (Toce_1219) - 1188731..1190218 (-) 1488 WP_013276015.1 AAA family ATPase -
  TOCE_RS06080 (Toce_1220) - 1190240..1190752 (-) 513 WP_148218394.1 hypothetical protein -
  TOCE_RS06085 (Toce_1221) rimO 1190859..1192184 (-) 1326 WP_013276017.1 30S ribosomal protein S12 methylthiotransferase RimO -
  TOCE_RS06090 (Toce_1222) - 1192308..1193171 (-) 864 WP_013276018.1 RodZ domain-containing protein -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45156.05 Da        Isoelectric Point: 5.2734

>NTDB_id=38002 TOCE_RS06070 WP_013276014.1 1187446..1188678(-) (cinA) [Thermosediminibacter oceani DSM 16646]
MKAEIISVGTELLLGQITNTNAQIISRELQKIGVDVYYHTSVGDNRERLMEVFHTAWNRSEAVILTGGLGPTQDDLTKET
ISEYLNLPLVLDESSLARIREFFEKRGREMPDNNLKQALLPEGSIAIPNDKGTAPGVLLEWDGRIVVMLPGPPFEMEPML
KAYVIPYISKKSSGVIFSRVLKFYGIGESTLEEKIKDLIESQTNPTIAPLAKMGEVTLRITAKACSIKEAMDMIAPVELK
ITERVGEYLYAYDDEKVEEIVARLLLRLNKTIAIAESCTGGLVSHKLTEVPGISKSLDRAIVSYSNRAKEELLFVKRETL
EKYGAVSEQTALEMADGVRRSSETDLGLSITGIAGPEGGTAAKPVGLVYIAYSDASDCIVERHLFSGNRSEIKERAANAA
LHLLRKSLLK

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=38002 TOCE_RS06070 WP_013276014.1 1187446..1188678(-) (cinA) [Thermosediminibacter oceani DSM 16646]
ATGAAAGCAGAAATAATTTCCGTAGGCACCGAATTGTTATTGGGTCAGATAACCAACACCAATGCCCAGATAATTTCCCG
GGAACTACAAAAAATCGGTGTTGACGTATACTATCATACAAGTGTGGGAGATAACAGAGAGCGATTAATGGAAGTATTTC
ACACAGCCTGGAACCGCTCCGAGGCCGTTATACTAACAGGCGGCCTCGGCCCAACTCAAGACGACCTCACTAAAGAGACA
ATATCCGAATATCTGAATCTCCCGCTGGTATTAGATGAATCTAGTCTTGCGAGAATCAGAGAATTTTTCGAAAAAAGGGG
CAGGGAAATGCCCGATAACAATTTGAAGCAGGCTCTGTTGCCGGAAGGGTCAATTGCAATCCCGAACGATAAGGGCACTG
CTCCGGGTGTACTGTTGGAATGGGATGGGAGGATTGTTGTAATGCTCCCGGGTCCTCCCTTCGAGATGGAACCCATGCTT
AAGGCGTATGTTATCCCGTACATATCAAAAAAGTCTTCCGGTGTGATTTTTTCGAGGGTATTGAAATTTTACGGCATCGG
CGAATCAACGTTGGAAGAAAAAATTAAGGATTTGATTGAAAGCCAGACAAATCCAACGATAGCTCCTCTGGCTAAAATGG
GAGAGGTAACCCTAAGGATTACAGCAAAGGCATGCAGTATAAAAGAAGCTATGGACATGATCGCTCCCGTGGAACTTAAA
ATAACCGAAAGAGTCGGAGAATATTTATACGCCTATGATGACGAAAAAGTGGAAGAAATAGTTGCACGATTGCTTCTAAG
ACTAAATAAAACTATAGCTATTGCCGAATCCTGTACGGGCGGCCTTGTGTCCCATAAACTAACTGAGGTACCCGGCATCT
CCAAGAGCCTTGACAGGGCCATAGTTTCATATAGCAACAGAGCTAAGGAAGAGCTTCTCTTTGTGAAGAGGGAAACTCTA
GAAAAATACGGCGCTGTAAGCGAACAGACCGCCCTCGAAATGGCGGACGGTGTAAGAAGGTCCTCCGAAACCGATTTGGG
CCTTTCGATAACGGGGATTGCAGGTCCGGAAGGCGGCACAGCGGCAAAACCTGTAGGGCTGGTTTACATCGCTTACTCCG
ACGCCTCAGATTGCATTGTAGAAAGGCACCTTTTTTCGGGTAACAGGTCCGAAATAAAGGAAAGGGCCGCCAATGCTGCC
CTTCACCTCTTGAGAAAAAGCCTTTTAAAGTAG

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(4-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(178-251)

Competence-damaged protein (CinA)

(255-407)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D9S3J8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

48.166

99.756

0.48
  cinA Streptococcus mitis NCTC 12261

42.79

100

0.441
  cinA Streptococcus pneumoniae TIGR4

42.553

100

0.439
  cinA Streptococcus pneumoniae Rx1

42.317

100

0.437
  cinA Streptococcus pneumoniae R6

42.317

100

0.437
  cinA Streptococcus mutans UA159

42.995

100

0.434
  cinA Streptococcus pneumoniae D39

42.08

100

0.434
  cinA Streptococcus mitis SK321

41.844

100

0.432
  cinA Streptococcus suis isolate S10

42.936

88.049

0.378

Multiple sequence alignment