Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   FSZ17_RS10260 Genome accession   NZ_CP042593
Coordinates   2169100..2170140 (+) Length   346 a.a.
NCBI ID   WP_057769951.1    Uniprot ID   A0A5B8Z3H8
Organism   Cytobacillus dafuensis strain FJAT-25496     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2164100..2175140
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSZ17_RS10235 (FSZ17_10235) - 2164672..2164932 (+) 261 WP_057769945.1 DUF3243 domain-containing protein -
  FSZ17_RS10240 (FSZ17_10240) - 2165136..2165930 (+) 795 WP_057769946.1 DUF3388 domain-containing protein -
  FSZ17_RS10245 (FSZ17_10245) - 2165949..2166863 (+) 915 WP_057769948.1 RodZ domain-containing protein -
  FSZ17_RS10250 (FSZ17_10250) pgsA 2166914..2167492 (+) 579 WP_057769949.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  FSZ17_RS10255 (FSZ17_10255) cinA 2167577..2168830 (+) 1254 WP_057769950.1 competence/damage-inducible protein A Machinery gene
  FSZ17_RS10260 (FSZ17_10260) recA 2169100..2170140 (+) 1041 WP_057769951.1 recombinase RecA Machinery gene
  FSZ17_RS10265 (FSZ17_10265) rny 2170460..2172028 (+) 1569 WP_057769952.1 ribonuclease Y -
  FSZ17_RS10270 (FSZ17_10270) - 2172130..2172927 (+) 798 WP_057769954.1 TIGR00282 family metallophosphoesterase -
  FSZ17_RS10275 (FSZ17_10275) spoVS 2173404..2173664 (+) 261 WP_009791522.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37674.91 Da        Isoelectric Point: 4.8402

>NTDB_id=378587 FSZ17_RS10260 WP_057769951.1 2169100..2170140(+) (recA) [Cytobacillus dafuensis strain FJAT-25496]
MSDRQAALEMALKQIEKQFGKGSIMKLGEQTDRKISTIPSGSLALDTALGVGGYPRGRIIEIYGPESSGKTTVALHAIAE
VQAAGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDILVIDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAEQLKQGTDIVGNKT
KIKVVKNKVAPPFRVAEVDIMYGEGVSKEGEIIDLGSELDIVQKSGSWYSYNEERLGQGRENAKQFLKENPEIRLQIQKQ
IRDHYGLDGEMVISGDEDQEEFELID

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=378587 FSZ17_RS10260 WP_057769951.1 2169100..2170140(+) (recA) [Cytobacillus dafuensis strain FJAT-25496]
ATGAGCGATCGTCAAGCCGCACTAGAAATGGCGTTAAAACAAATAGAAAAACAATTCGGTAAAGGCTCAATTATGAAGCT
TGGAGAACAAACGGATCGGAAAATCTCCACCATTCCAAGCGGCTCTCTTGCACTAGATACTGCACTAGGAGTTGGGGGTT
ATCCAAGAGGCCGAATAATTGAAATTTATGGCCCTGAGAGCTCAGGTAAGACAACCGTTGCCTTACATGCTATTGCAGAA
GTTCAAGCAGCAGGTGGACAAGCTGCATTTATCGATGCTGAACATGCACTTGATCCGGTCTATGCACAAAAGCTTGGCGT
AAATATTGATGAATTATTGCTTTCCCAACCTGATACAGGTGAACAAGCTTTAGAGATAGCGGAAGCCCTTGTAAGAAGCG
GTGCAGTAGATATTCTTGTCATTGACTCTGTTGCTGCTCTCGTGCCTAAGGCAGAGATTGAAGGGGAAATGGGAGACTCT
CATGTCGGTTTACAGGCACGTCTTATGTCACAGGCCCTTCGTAAACTATCGGGAGCCATTAATAAATCAAAAACGATTGC
TATTTTTATTAACCAGATTCGTGAAAAAGTAGGAGTTATGTTTGGGAATCCTGAAACAACACCAGGGGGACGTGCACTTA
AATTCTATTCAACAATCCGTCTTGAAGTGCGCCGTGCTGAACAATTAAAGCAAGGTACTGATATAGTAGGTAATAAAACG
AAGATTAAAGTCGTCAAGAATAAGGTTGCACCTCCATTCCGTGTAGCAGAAGTGGATATTATGTATGGAGAGGGAGTTTC
CAAGGAAGGCGAAATTATTGATTTAGGATCTGAATTAGACATCGTTCAAAAGAGCGGTTCGTGGTATTCCTACAACGAAG
AGCGCCTAGGCCAAGGGCGTGAAAATGCAAAGCAGTTTCTTAAGGAAAACCCTGAGATTCGCCTACAAATTCAAAAGCAA
ATCCGTGATCACTATGGCCTTGATGGTGAAATGGTTATTAGTGGCGATGAAGATCAAGAGGAATTTGAACTTATTGATTA
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B8Z3H8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

90.39

96.243

0.87
  recA Latilactobacillus sakei subsp. sakei 23K

75.077

93.931

0.705
  recA Streptococcus pneumoniae D39

67.723

100

0.679
  recA Streptococcus pneumoniae R6

67.723

100

0.679
  recA Streptococcus pneumoniae TIGR4

67.723

100

0.679
  recA Streptococcus pneumoniae Rx1

67.723

100

0.679
  recA Streptococcus mitis NCTC 12261

67.638

99.133

0.671
  recA Streptococcus mitis SK321

67.347

99.133

0.668
  recA Streptococcus mutans UA159

68.389

95.087

0.65
  recA Streptococcus pyogenes NZ131

67.683

94.798

0.642
  recA Lactococcus lactis subsp. cremoris KW2

66.061

95.376

0.63
  recA Neisseria gonorrhoeae MS11

63.557

99.133

0.63
  recA Neisseria gonorrhoeae MS11

63.557

99.133

0.63
  recA Neisseria gonorrhoeae strain FA1090

63.557

99.133

0.63
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.717

97.977

0.624
  recA Ralstonia pseudosolanacearum GMI1000

65.138

94.509

0.616
  recA Helicobacter pylori 26695

61.404

98.844

0.607
  recA Helicobacter pylori strain NCTC11637

61.404

98.844

0.607
  recA Glaesserella parasuis strain SC1401

60.694

100

0.607
  recA Vibrio cholerae strain A1552

65.109

92.775

0.604
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.109

92.775

0.604
  recA Acinetobacter baumannii D1279779

60.116

100

0.601
  recA Acinetobacter baylyi ADP1

60

99.711

0.598
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.997

94.509

0.595
  recA Pseudomonas stutzeri DSM 10701

63.125

92.486

0.584
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.25

92.486

0.566

Multiple sequence alignment