Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   FOH38_RS15680 Genome accession   NZ_CP041696
Coordinates   3225106..3226173 (+) Length   355 a.a.
NCBI ID   WP_143997732.1    Uniprot ID   -
Organism   Lysinibacillus fusiformis strain 1226     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3220106..3231173
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOH38_RS15655 (FOH38_15655) - 3220827..3221084 (+) 258 WP_143997728.1 DUF3243 domain-containing protein -
  FOH38_RS15660 (FOH38_15660) - 3221311..3222099 (+) 789 WP_143999307.1 DUF3388 domain-containing protein -
  FOH38_RS15665 (FOH38_15665) - 3222125..3223042 (+) 918 WP_143997729.1 RodZ family helix-turn-helix domain-containing protein -
  FOH38_RS15670 (FOH38_15670) pgsA 3223090..3223668 (+) 579 WP_143997730.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  FOH38_RS15675 (FOH38_15675) cinA 3223686..3224945 (+) 1260 WP_143997731.1 competence/damage-inducible protein A Machinery gene
  FOH38_RS15680 (FOH38_15680) recA 3225106..3226173 (+) 1068 WP_143997732.1 recombinase RecA Machinery gene
  FOH38_RS15685 (FOH38_15685) rny 3226953..3228512 (+) 1560 WP_143997733.1 ribonuclease Y -
  FOH38_RS15690 (FOH38_15690) - 3228769..3229476 (-) 708 WP_143997734.1 diphthine--ammonia ligase -
  FOH38_RS15695 (FOH38_15695) - 3230071..3230796 (+) 726 WP_143997735.1 YveK family protein -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 38205.35 Da        Isoelectric Point: 4.6844

>NTDB_id=373275 FOH38_RS15680 WP_143997732.1 3225106..3226173(+) (recA) [Lysinibacillus fusiformis strain 1226]
MSDRKAALEQALKQIEKNFGKGSIMKLGEKTDLEIATSSSGSLALDAALGVGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQASGGQAAFIDAEHALDPIYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAIDIIVIDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKIGVMFGNPETTPGGRALKFYSSVRLEVRRAEAIKQGNDIMGNRT
KIKIVKNKVAPPFRTAEVDIMYGEGISKEGETVDLGVELDIVQKSGSWYAYGDERLGQGRENAKQYLKENSAVLDDIANK
IRASYGIASSAYTIAAHDEDEEVDEELMLLLEEEK

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=373275 FOH38_RS15680 WP_143997732.1 3225106..3226173(+) (recA) [Lysinibacillus fusiformis strain 1226]
ATGAGTGATCGTAAAGCTGCCTTAGAACAGGCGTTAAAGCAAATTGAAAAGAATTTTGGGAAAGGTTCTATCATGAAGCT
TGGCGAAAAAACAGATTTAGAAATAGCAACATCTTCAAGTGGTTCGCTAGCACTTGATGCAGCATTAGGTGTTGGTGGTT
ATCCTCGTGGACGTATTATTGAAGTATATGGCCCAGAATCATCAGGTAAAACAACAGTTGCCTTACATGCAATTGCGGAA
GTACAAGCTTCAGGTGGGCAGGCAGCATTTATCGATGCTGAGCACGCATTAGACCCAATCTATGCTCAAAAATTAGGTGT
TAACATTGACGAATTATTATTATCGCAACCAGATACTGGCGAACAAGCGCTTGAAATTGCAGAAGCATTAGTACGCAGTG
GTGCTATCGATATCATCGTTATTGACTCAGTAGCAGCATTAGTGCCAAAAGCGGAAATCGAAGGTGATATGGGTGATTCG
CACGTTGGTTTACAAGCGCGATTAATGTCTCAGGCTTTACGAAAGCTTTCTGGCGCTATCAATAAATCAAAAACTATTGC
CATCTTCATTAACCAAATTCGTGAAAAAATTGGTGTCATGTTCGGGAACCCAGAAACAACTCCTGGTGGTCGTGCGCTTA
AATTCTACAGCTCTGTTCGTTTAGAAGTACGTCGTGCAGAAGCTATTAAACAAGGCAATGACATTATGGGTAACCGTACG
AAAATTAAAATTGTGAAAAACAAAGTAGCACCACCATTCCGTACAGCTGAAGTTGATATTATGTACGGTGAAGGCATTTC
AAAAGAGGGCGAGACAGTCGATTTAGGTGTTGAGCTAGACATCGTGCAAAAAAGCGGCTCTTGGTATGCATATGGTGATG
AGCGTCTAGGACAAGGCCGTGAAAATGCAAAACAATACTTAAAAGAAAACTCTGCTGTCCTAGATGATATTGCTAATAAA
ATCCGTGCTTCCTACGGTATTGCTTCATCTGCTTATACAATTGCAGCACATGATGAAGACGAGGAAGTGGATGAAGAATT
AATGCTTCTTCTTGAAGAAGAAAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

86.85

92.113

0.8
  recA Latilactobacillus sakei subsp. sakei 23K

73.392

96.338

0.707
  recA Streptococcus pneumoniae Rx1

64.11

100

0.659
  recA Streptococcus pneumoniae D39

64.11

100

0.659
  recA Streptococcus pneumoniae R6

64.11

100

0.659
  recA Streptococcus pneumoniae TIGR4

64.11

100

0.659
  recA Streptococcus mitis NCTC 12261

64.365

100

0.656
  recA Streptococcus mutans UA159

63.611

100

0.645
  recA Streptococcus mitis SK321

67.576

92.958

0.628
  recA Lactococcus lactis subsp. cremoris KW2

66.97

92.958

0.623
  recA Streptococcus pyogenes NZ131

67.378

92.394

0.623
  recA Neisseria gonorrhoeae strain FA1090

65.653

92.676

0.608
  recA Neisseria gonorrhoeae MS11

65.653

92.676

0.608
  recA Neisseria gonorrhoeae MS11

65.653

92.676

0.608
  recA Acinetobacter baylyi ADP1

62.099

96.62

0.6
  recA Ralstonia pseudosolanacearum GMI1000

63.664

93.803

0.597
  recA Acinetobacter baumannii D1279779

60.571

98.592

0.597
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.059

95.775

0.594
  recA Helicobacter pylori strain NCTC11637

64.923

91.549

0.594
  recA Glaesserella parasuis strain SC1401

60.694

97.465

0.592
  recA Helicobacter pylori 26695

64.615

91.549

0.592
  recA Pseudomonas stutzeri DSM 10701

59.71

97.183

0.58
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.883

91.831

0.577
  recA Vibrio cholerae strain A1552

63.438

90.141

0.572
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.438

90.141

0.572
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.229

90.986

0.566

Multiple sequence alignment