Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   FOH38_RS15675 Genome accession   NZ_CP041696
Coordinates   3223686..3224945 (+) Length   419 a.a.
NCBI ID   WP_143997731.1    Uniprot ID   -
Organism   Lysinibacillus fusiformis strain 1226     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3218686..3229945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOH38_RS15645 (FOH38_15645) - 3218756..3220057 (+) 1302 WP_143997726.1 pitrilysin family protein -
  FOH38_RS15650 (FOH38_15650) - 3220054..3220782 (+) 729 WP_143997727.1 SDR family oxidoreductase -
  FOH38_RS15655 (FOH38_15655) - 3220827..3221084 (+) 258 WP_143997728.1 DUF3243 domain-containing protein -
  FOH38_RS15660 (FOH38_15660) - 3221311..3222099 (+) 789 WP_143999307.1 DUF3388 domain-containing protein -
  FOH38_RS15665 (FOH38_15665) - 3222125..3223042 (+) 918 WP_143997729.1 RodZ family helix-turn-helix domain-containing protein -
  FOH38_RS15670 (FOH38_15670) pgsA 3223090..3223668 (+) 579 WP_143997730.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  FOH38_RS15675 (FOH38_15675) cinA 3223686..3224945 (+) 1260 WP_143997731.1 competence/damage-inducible protein A Machinery gene
  FOH38_RS15680 (FOH38_15680) recA 3225106..3226173 (+) 1068 WP_143997732.1 recombinase RecA Machinery gene
  FOH38_RS15685 (FOH38_15685) rny 3226953..3228512 (+) 1560 WP_143997733.1 ribonuclease Y -
  FOH38_RS15690 (FOH38_15690) - 3228769..3229476 (-) 708 WP_143997734.1 diphthine--ammonia ligase -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45226.68 Da        Isoelectric Point: 4.9113

>NTDB_id=373274 FOH38_RS15675 WP_143997731.1 3223686..3224945(+) (cinA) [Lysinibacillus fusiformis strain 1226]
MNAEILAVGSELLLGQITNTNAKFISSQLSELGINVFYHTVVGDNSKRLEEAITVAESRADLIIFSGGLGPTKDDLTKET
IARHLGVNLAFDEVALSYIEQFFAKRGRPMTENNRKQALVLAGSEVLANHHGMAPGMILTKDERTYILLPGPPKELEPMF
QFEAKPKLGAMLNDGGVIVSHVMRFYGIGEAELEVSVQDILDTQTNPTIAPLASDGEVTLRVTAKAETEGKARQLIASKV
AEIQAIVGDYQYGIDDDSLASKTVEMLLDNKLTISAAESLTAGLFQSELAEIPGVGTALIGGLVTYTEEAKVKQLGISQE
LLDTHGIVSSECAAAMASTVREKFGTTIGIGLTGAAGPTAHDHQPVGTVWIGIAIGDEDPITYLLHLSGMRNTNRLRAVK
FTCHYLMHQLEERGYMKRY

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=373274 FOH38_RS15675 WP_143997731.1 3223686..3224945(+) (cinA) [Lysinibacillus fusiformis strain 1226]
ATGAATGCTGAAATTCTTGCAGTTGGTTCAGAATTATTGCTTGGACAGATTACAAATACAAATGCGAAGTTTATCTCAAG
TCAGCTGTCTGAGCTAGGGATTAATGTGTTTTATCATACGGTTGTTGGAGACAATTCAAAAAGATTAGAAGAGGCAATCA
CGGTAGCAGAATCTCGTGCAGATTTAATTATTTTCTCAGGTGGTCTTGGTCCTACAAAGGATGACTTAACAAAGGAAACA
ATTGCACGCCATCTTGGTGTCAATCTAGCATTTGATGAGGTAGCCCTTTCCTATATCGAACAGTTCTTTGCAAAACGAGG
ACGACCAATGACGGAAAATAATCGTAAACAGGCGCTTGTATTAGCAGGTAGTGAAGTGCTGGCAAACCATCATGGTATGG
CTCCTGGTATGATACTGACGAAGGATGAACGTACTTATATTCTACTTCCTGGTCCTCCCAAAGAACTTGAACCAATGTTC
CAATTTGAAGCAAAACCTAAGCTTGGTGCGATGCTCAATGATGGTGGAGTAATTGTGTCTCACGTGATGCGCTTTTATGG
CATCGGCGAAGCTGAGCTAGAGGTTAGCGTGCAAGACATTCTTGATACACAGACAAATCCAACCATTGCACCACTCGCAT
CTGACGGTGAAGTCACATTGCGTGTTACAGCGAAGGCAGAAACAGAAGGTAAAGCCCGACAGCTTATTGCATCGAAAGTG
GCTGAAATCCAGGCGATTGTTGGAGACTATCAATATGGCATTGATGATGATTCTCTTGCCTCTAAGACGGTGGAGATGCT
GTTAGATAATAAATTAACAATTTCTGCGGCTGAGAGCTTAACAGCAGGTTTATTTCAGTCAGAGCTGGCTGAGATTCCAG
GGGTAGGTACTGCGCTCATTGGTGGCCTTGTCACTTATACAGAAGAGGCAAAGGTGAAGCAACTTGGTATCTCACAGGAA
TTATTAGATACGCATGGCATTGTAAGTAGTGAATGTGCTGCAGCGATGGCCAGCACTGTACGTGAGAAGTTCGGTACAAC
TATTGGTATTGGTCTTACGGGTGCTGCAGGCCCGACAGCACATGACCACCAACCCGTAGGAACGGTTTGGATTGGGATTG
CTATTGGTGACGAAGATCCAATAACGTATTTATTACATTTATCGGGTATGCGCAATACGAATCGTTTGCGTGCGGTGAAG
TTTACATGTCATTACTTAATGCACCAATTGGAAGAACGAGGCTATATGAAACGTTACTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Competence-damaged protein (CinA)

(257-409)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

51.942

98.329

0.511
  cinA Streptococcus mitis SK321

45.431

91.408

0.415
  cinA Streptococcus pneumoniae Rx1

45.17

91.408

0.413
  cinA Streptococcus pneumoniae TIGR4

45.17

91.408

0.413
  cinA Streptococcus pneumoniae R6

45.17

91.408

0.413
  cinA Streptococcus mitis NCTC 12261

44.909

91.408

0.411
  cinA Streptococcus pneumoniae D39

44.909

91.408

0.411
  cinA Streptococcus mutans UA159

44.709

90.215

0.403

Multiple sequence alignment