Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   VV7356_RS20400 Genome accession   NZ_CP041683
Coordinates   4550340..4551389 (-) Length   349 a.a.
NCBI ID   WP_026130625.1    Uniprot ID   -
Organism   Vibrio vulnificus strain 7356     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4545340..4556389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VV7356_RS20380 (VV7356_20960) csrA 4545345..4545536 (-) 192 WP_011079528.1 carbon storage regulator CsrA -
  VV7356_RS20385 (VV7356_20965) - 4545628..4546815 (-) 1188 WP_011151141.1 aspartate kinase -
  VV7356_RS20390 (VV7356_20970) alaS 4547012..4549594 (-) 2583 WP_017789864.1 alanine--tRNA ligase -
  VV7356_RS20395 (VV7356_20975) recX 4549775..4550236 (-) 462 WP_017789863.1 recombination regulator RecX -
  VV7356_RS20400 (VV7356_20980) recA 4550340..4551389 (-) 1050 WP_026130625.1 recombinase RecA Machinery gene
  VV7356_RS20405 (VV7356_20985) pncC 4551523..4552026 (-) 504 WP_017789861.1 nicotinamide-nucleotide amidase -
  VV7356_RS20410 (VV7356_20990) mutS 4552110..4554671 (+) 2562 WP_039508900.1 DNA mismatch repair protein MutS -
  VV7356_RS20415 (VV7356_20995) rpoS 4554747..4555739 (-) 993 WP_411202395.1 RNA polymerase sigma factor RpoS Regulator

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37683.24 Da        Isoelectric Point: 4.8857

>NTDB_id=373024 VV7356_RS20400 WP_026130625.1 4550340..4551389(-) (recA) [Vibrio vulnificus strain 7356]
MDENKQKALAAALGQIEKQFGKGSIMRLGDNRAMDVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIA
AAQREGKTCAFIDAEHALDPVYAKKLGVNIDQLLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNE
TRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKCKLIEKSGAWYSYNGDKIGQGKANACKYLKENVDVAKVLDT
KLRELLLSSANISDESAELVEEMPEQEEF

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=373024 VV7356_RS20400 WP_026130625.1 4550340..4551389(-) (recA) [Vibrio vulnificus strain 7356]
ATGGACGAGAACAAACAGAAGGCACTGGCCGCCGCACTAGGTCAAATTGAAAAGCAGTTCGGTAAAGGTTCAATCATGCG
CCTAGGTGACAACCGTGCGATGGATGTTGAAACCATCTCGACAGGTTCACTATCTCTGGATATTGCGCTGGGTGCTGGTG
GCTTACCAATGGGCCGTATCGTTGAAATTTTTGGTCCAGAATCTTCAGGTAAAACCACGTTGACCCTTGAGCTGATCGCT
GCGGCTCAACGTGAAGGCAAAACTTGTGCGTTTATCGATGCTGAGCACGCGTTGGATCCTGTGTATGCGAAGAAACTTGG
CGTAAATATCGACCAATTGTTGGTATCTCAGCCTGATACTGGTGAACAAGCATTGGAAATCTGTGATGCTCTTGCTCGCT
CAGGTGCGGTTGACGTTATTGTTGTCGACTCTGTGGCAGCATTGACACCAAAGGCAGAAATCGAAGGTGAGATGGGCGAT
TCGCACATGGGTCTTCAAGCTCGTATGCTCTCTCAAGCGATGCGTAAGTTAACGGGGAACCTAAAACAGTCTAACTGTAT
GTGTATCTTCATCAACCAGATCCGTATGAAGATCGGTGTGATGTTTGGTAACCCAGAAACCACAACAGGTGGTAACGCAC
TGAAATTCTACGCTTCTGTTCGTCTTGATATTCGCCGTACTGGTGCGATCAAAGAAGGCGATGAGGTAGTGGGTAATGAA
ACGCGTATCAAAGTGGTGAAGAATAAGATCGCTGCGCCGTTTAAAGAAGCCAACACTCAAATTATGTACGGCCAGGGCTT
TAACCGTGAAGGCGAACTGATTGACCTAGGCGTGAAATGTAAGCTGATTGAAAAATCAGGCGCTTGGTACAGCTATAACG
GCGACAAAATTGGCCAAGGTAAAGCGAACGCTTGTAAGTACCTGAAAGAAAACGTAGATGTAGCAAAAGTATTGGATACG
AAATTGCGTGAATTGTTGCTTTCTTCAGCAAACATCAGCGATGAATCGGCAGAGTTAGTCGAAGAAATGCCAGAGCAAGA
AGAGTTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae O1 biovar El Tor strain E7946

91.243

100

0.926
  recA Vibrio cholerae strain A1552

91.243

100

0.926
  recA Pseudomonas stutzeri DSM 10701

75

95.129

0.713
  recA Glaesserella parasuis strain SC1401

69.602

100

0.702
  recA Acinetobacter baylyi ADP1

70.145

98.854

0.693
  recA Acinetobacter baumannii D1279779

72.948

94.269

0.688
  recA Neisseria gonorrhoeae strain FA1090

65.805

99.713

0.656
  recA Neisseria gonorrhoeae MS11

65.805

99.713

0.656
  recA Neisseria gonorrhoeae MS11

65.805

99.713

0.656
  recA Ralstonia pseudosolanacearum GMI1000

69.113

93.696

0.648
  recA Helicobacter pylori strain NCTC11637

59.884

98.567

0.59
  recA Streptococcus pneumoniae D39

58.857

100

0.59
  recA Streptococcus pneumoniae TIGR4

58.857

100

0.59
  recA Streptococcus pneumoniae Rx1

58.857

100

0.59
  recA Streptococcus pneumoniae R6

58.857

100

0.59
  recA Helicobacter pylori 26695

59.593

98.567

0.587
  recA Latilactobacillus sakei subsp. sakei 23K

58.96

99.14

0.585
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.241

90.544

0.582
  recA Bacillus subtilis subsp. subtilis str. 168

63.24

91.977

0.582
  recA Streptococcus mitis SK321

61.92

92.55

0.573
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.423

94.842

0.573
  recA Lactococcus lactis subsp. cremoris KW2

61.61

92.55

0.57
  recA Streptococcus mitis NCTC 12261

61.61

92.55

0.57
  recA Streptococcus pyogenes NZ131

60.615

93.123

0.564
  recA Streptococcus mutans UA159

60.615

93.123

0.564
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.258

88.825

0.553

Multiple sequence alignment