Detailed information NTG0373026

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: VV7356_RS20415
• Genome accession: NZ_CP041683
• Coordinates: 4554747..4555739 (-)
• Length: 330 a.a.
• NCBI ID: WP_411202395.1
• Uniprot ID: -
• Organism: Vibrio vulnificus strain 7356
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4549747..4560739

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VV7356_RS20395 (VV7356_20975)	recX	4549775..4550236 (-)	462	WP_017789863.1	recombination regulator RecX	-
VV7356_RS20400 (VV7356_20980)	recA	4550340..4551389 (-)	1050	WP_026130625.1	recombinase RecA	Machinery gene
VV7356_RS20405 (VV7356_20985)	pncC	4551523..4552026 (-)	504	WP_017789861.1	nicotinamide-nucleotide amidase	-
VV7356_RS20410 (VV7356_20990)	mutS	4552110..4554671 (+)	2562	WP_039508900.1	DNA mismatch repair protein MutS	-
VV7356_RS20415 (VV7356_20995)	rpoS	4554747..4555739 (-)	993	WP_411202395.1	RNA polymerase sigma factor RpoS	Regulator
VV7356_RS20420 (VV7356_21000)	-	4555820..4556716 (-)	897	WP_080721534.1	peptidoglycan DD-metalloendopeptidase family protein	-
VV7356_RS20425 (VV7356_21005)	-	4556760..4557386 (-)	627	WP_011079519.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
VV7356_RS20430 (VV7356_21010)	surE	4557389..4558156 (-)	768	WP_011079518.1	5'/3'-nucleotidase SurE	-
VV7356_RS20435 (VV7356_21015)	truD	4558162..4559205 (-)	1044	WP_026130623.1	tRNA pseudouridine(13) synthase TruD	-
VV7356_RS20440 (VV7356_21020)	ispF	4559241..4559717 (-)	477	WP_017789857.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
VV7356_RS20445 (VV7356_21025)	ispD	4559714..4560427 (-)	714	WP_017789856.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
VV7356_RS20450 (VV7356_21030)	ftsB	4560427..4560708 (-)	282	WP_017420271.1	cell division protein FtsB	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 38040.07 Da
• Isoelectric Point: 4.4791

>NTDB_id=373026 VV7356_RS20415 WP_411202395.1 4554747..4555739(-) (rpoS) [Vibrio vulnificus strain 7356]
MSISNTVTKVKDLDVNQMDDDFNDDIEMNEKEDLTEEKVTLREEFDASNKSLDATQLYLGEIGFSPQLTAEEEVLYARRA
LRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTR
TIRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLEIPVDDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANN
SDPEVSTQDEDMRVSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGQEIGLTRERVRQIQVEGLRRLREVLIKQGLN
MENLFDIDMD

Nucleotide

• Length: 993 bp

>NTDB_id=373026 VV7356_RS20415 WP_411202395.1 4554747..4555739(-) (rpoS) [Vibrio vulnificus strain 7356]
ATGAGTATCAGCAACACAGTCACCAAAGTTAAAGATCTCGATGTTAATCAGATGGATGATGATTTTAACGACGATATCGA
GATGAATGAAAAAGAAGATCTTACCGAAGAAAAAGTCACACTTCGCGAGGAGTTTGACGCCAGCAACAAGAGCTTAGACG
CGACGCAGCTCTATCTAGGAGAAATTGGCTTTTCTCCACAATTAACCGCAGAAGAAGAAGTGCTTTATGCTCGACGTGCA
TTACGAGGCGATGAAGCCGCGCGTAAACGTATGATTGAAAGTAACTTACGTCTAGTGGTTAAGATTTCCCGCCGTTACAG
TAATCGCGGTCTTGCACTGCTTGATTTGATTGAAGAGGGTAACCTTGGTTTGATCCGTGCGGTAGAGAAATTCGATCCTG
AGCGTGGTTTCCGCTTCTCGACTTACGCAACATGGTGGATTCGCCAAACTATCGAACGTGCTTTAATGAATCAGACTCGA
ACCATTCGTTTACCTATCCATGTTGTTAAAGAGCTGAACATTTATCTACGTACGGCGCGTGAACTTTCTCAAAAACTCGA
TCATGAGCCAACCGCTGAAGAGATCGCTGCGCAACTGGAGATTCCGGTTGACGATGTGAGCAAAATGCTGCGTTTGAACG
AGCGCATTAGTTCTGTCGATACACCGATTGGTGGAGATGGAGAGAAGGCGTTATTGGATATTATTCCTGATGCAAACAAC
TCTGACCCAGAGGTTTCAACGCAAGATGAAGACATGCGTGTTTCCTTGATTCATTGGTTGGAAGAGCTCAATCCGAAACA
AAAAGAAGTGTTGGCACGTCGCTTTGGTTTGTTGGGCTATGAGCCTTCAACACTGGAGGAGGTTGGACAAGAGATTGGTT
TAACTCGTGAGCGAGTGCGCCAGATTCAGGTTGAAGGGTTACGTCGCCTCCGTGAAGTTCTGATCAAACAAGGTCTGAAT
ATGGAAAACTTGTTTGATATCGATATGGATTGA

Domains

Predicted by InterproScan.

• Sigma-70 region 2 (Sigma70_r2) (91-160)

• Sigma-70, region 4 (Sigma70_r4) (259-312)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (53-86)

• Sigma-70 region 3 (Sigma70_r3) (171-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	81.009	100	0.827