Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   FLK61_RS10440 Genome accession   NZ_CP041372
Coordinates   1967260..1968312 (-) Length   350 a.a.
NCBI ID   WP_176009403.1    Uniprot ID   A0A859FEV6
Organism   Paenalkalicoccus suaedae strain M4U3P1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1962260..1973312
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FLK61_RS10425 (FLK61_32205) - 1963945..1964205 (-) 261 WP_176009400.1 stage V sporulation protein S -
  FLK61_RS10430 (FLK61_32210) - 1964489..1965283 (-) 795 WP_176009401.1 TIGR00282 family metallophosphoesterase -
  FLK61_RS10435 (FLK61_32215) rny 1965360..1966922 (-) 1563 WP_176009402.1 ribonuclease Y -
  FLK61_RS10440 (FLK61_32220) recA 1967260..1968312 (-) 1053 WP_176009403.1 recombinase RecA Machinery gene
  FLK61_RS10445 (FLK61_32225) - 1968451..1970040 (-) 1590 WP_176009404.1 DEAD/DEAH box helicase -
  FLK61_RS10450 (FLK61_32230) cinA 1970041..1971288 (-) 1248 WP_176009405.1 competence/damage-inducible protein A Machinery gene
  FLK61_RS10455 (FLK61_32235) pgsA 1971301..1971879 (-) 579 WP_176009406.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  FLK61_RS10460 (FLK61_32240) - 1972076..1972981 (-) 906 WP_176009407.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 38122.40 Da        Isoelectric Point: 4.9216

>NTDB_id=371689 FLK61_RS10440 WP_176009403.1 1967260..1968312(-) (recA) [Paenalkalicoccus suaedae strain M4U3P1]
MSDRKQALDMALKQIEKQFGKGSIMKLGERAEQRVSTISSGTLALDIALGVGGYPRGRVIEIYGPESSGKTTVALHAIAE
VQRNGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVVDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAVSKSKTIAMFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAETLKQGNDMIGNKT
KIKVVKNKVAPPFRVAEVDIMYGEGISREGSLVDIATELDIIQKSGAWYSYNEERMGQGRENAKTFLKENEDILNDIERR
TREHYGLLEPIDVPAADAVEDSDDDLLDLK

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=371689 FLK61_RS10440 WP_176009403.1 1967260..1968312(-) (recA) [Paenalkalicoccus suaedae strain M4U3P1]
ATGTCAGATCGTAAACAAGCACTAGATATGGCGTTAAAGCAAATTGAGAAACAATTTGGTAAAGGCTCTATTATGAAATT
AGGAGAGCGAGCGGAACAGCGCGTATCTACTATTTCATCAGGAACACTAGCTCTAGATATTGCTCTTGGAGTAGGTGGAT
ATCCACGAGGTCGTGTCATTGAGATCTATGGACCTGAATCATCTGGTAAAACAACCGTAGCCCTTCATGCTATTGCAGAA
GTACAGCGTAACGGTGGTCAGGCAGCATTTATTGACGCCGAGCACGCACTAGATCCTGTATATGCGCAAAAGCTAGGTGT
TAATATTGATGAATTGCTTCTTTCGCAACCTGATACAGGGGAGCAAGCACTTGAGATCGCAGAAGCACTTGTACGAAGTG
GTGCAGTAGATATTATTGTTGTTGACTCTGTAGCTGCACTTGTACCAAAAGCGGAGATTGAAGGCGAAATGGGTGACAGC
CACGTAGGTTTACAAGCACGTCTTATGTCCCAAGCCCTTAGAAAGCTATCTGGTGCCGTTAGTAAATCTAAAACGATTGC
GATGTTTATTAACCAGATCCGTGAGAAAGTCGGCGTTATGTTCGGTAACCCGGAAACGACTCCTGGTGGACGAGCGCTTA
AATTCTATTCGTCTGTGCGTCTAGAAGTTCGTCGTGCTGAAACATTAAAGCAAGGAAATGACATGATCGGTAACAAAACG
AAAATTAAAGTTGTTAAAAATAAAGTAGCGCCTCCATTCCGTGTTGCAGAAGTGGATATCATGTACGGAGAAGGTATTTC
TCGTGAAGGTTCTTTAGTGGATATCGCAACGGAGCTTGATATTATCCAAAAGAGCGGTGCATGGTACTCATACAATGAAG
AGCGTATGGGTCAAGGTCGTGAAAATGCGAAGACATTCCTAAAAGAGAATGAGGATATTTTAAATGATATCGAGCGACGT
ACGCGTGAACATTACGGTCTTTTAGAGCCTATAGATGTTCCAGCTGCTGATGCTGTTGAAGATAGCGACGATGATCTTTT
AGATTTAAAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(6-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A859FEV6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

86.239

93.429

0.806
  recA Latilactobacillus sakei subsp. sakei 23K

73.547

98.286

0.723
  recA Streptococcus pyogenes NZ131

69.405

100

0.7
  recA Streptococcus mutans UA159

71.601

94.571

0.677
  recA Streptococcus pneumoniae Rx1

67.147

99.143

0.666
  recA Streptococcus pneumoniae D39

67.147

99.143

0.666
  recA Streptococcus pneumoniae R6

67.147

99.143

0.666
  recA Streptococcus pneumoniae TIGR4

67.147

99.143

0.666
  recA Streptococcus mitis NCTC 12261

69.277

94.857

0.657
  recA Streptococcus mitis SK321

68.976

94.857

0.654
  recA Lactococcus lactis subsp. cremoris KW2

67.56

96

0.649
  recA Ralstonia pseudosolanacearum GMI1000

61.538

100

0.617
  recA Acinetobacter baylyi ADP1

61.318

99.714

0.611
  recA Vibrio cholerae strain A1552

61.919

98.286

0.609
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.919

98.286

0.609
  recA Neisseria gonorrhoeae MS11

65.337

93.143

0.609
  recA Neisseria gonorrhoeae MS11

65.337

93.143

0.609
  recA Neisseria gonorrhoeae strain FA1090

65.337

93.143

0.609
  recA Acinetobacter baumannii D1279779

60.983

98.857

0.603
  recA Glaesserella parasuis strain SC1401

61.877

97.429

0.603
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.19

93.143

0.589
  recA Pseudomonas stutzeri DSM 10701

59.649

97.714

0.583
  recA Helicobacter pylori strain NCTC11637

60.417

96

0.58
  recA Helicobacter pylori 26695

60.417

96

0.58
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.468

93.429

0.574
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.755

91.143

0.563

Multiple sequence alignment