Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   FLK61_RS10450 Genome accession   NZ_CP041372
Coordinates   1970041..1971288 (-) Length   415 a.a.
NCBI ID   WP_176009405.1    Uniprot ID   A0A859FES4
Organism   Paenalkalicoccus suaedae strain M4U3P1     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1965041..1976288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FLK61_RS10435 (FLK61_32215) rny 1965360..1966922 (-) 1563 WP_176009402.1 ribonuclease Y -
  FLK61_RS10440 (FLK61_32220) recA 1967260..1968312 (-) 1053 WP_176009403.1 recombinase RecA Machinery gene
  FLK61_RS10445 (FLK61_32225) - 1968451..1970040 (-) 1590 WP_176009404.1 DEAD/DEAH box helicase -
  FLK61_RS10450 (FLK61_32230) cinA 1970041..1971288 (-) 1248 WP_176009405.1 competence/damage-inducible protein A Machinery gene
  FLK61_RS10455 (FLK61_32235) pgsA 1971301..1971879 (-) 579 WP_176009406.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  FLK61_RS10460 (FLK61_32240) - 1972076..1972981 (-) 906 WP_176009407.1 helix-turn-helix domain-containing protein -
  FLK61_RS10465 (FLK61_32245) - 1973009..1973776 (-) 768 WP_176009408.1 DUF3388 domain-containing protein -
  FLK61_RS10470 (FLK61_32250) - 1973915..1974160 (-) 246 WP_176009409.1 DUF3243 domain-containing protein -
  FLK61_RS10475 (FLK61_32255) - 1974229..1974957 (-) 729 WP_176009410.1 SDR family oxidoreductase -
  FLK61_RS10480 (FLK61_32260) - 1974947..1976251 (-) 1305 WP_176009411.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 415 a.a.        Molecular weight: 45111.22 Da        Isoelectric Point: 4.8463

>NTDB_id=371690 FLK61_RS10450 WP_176009405.1 1970041..1971288(-) (cinA) [Paenalkalicoccus suaedae strain M4U3P1]
MNAEIIAVGSELLLGQIDNTNASFLSRELSSIGINVFYHQAVGDNEARLTSVLQASTERSDIVIVTGGLGPTKDDLTKET
VAKLVNKELVYDNETYTRLEAFFISRNRTMTDNNKKQALIVEGAHVLQNDAGLACGMAIKHNDTIFVLLPGPPSELKPMV
KSYALAFLQKEMGQQHVIESLILRFFEIGESRLVEELDDLIEAQTNPTIAPLASDGECMLRLTVKGSSTHENMQKLDALK
DTILDRVGEYCYGVGEPTLEEVTVNELLTKSATVSSAESLTGGLFAEQLTSVTGTSKCFKGGTICYTNEAKESFGVPASV
LAEYGAISEQTAQHLAELAKKTYDSTYAVSMTGVAGPDSSENKQPGLVYIGIATPSTTHIYSIQAGGNRQRVRVLAAKYA
MYYLLKELRKKKVDD

Nucleotide


Download         Length: 1248 bp        

>NTDB_id=371690 FLK61_RS10450 WP_176009405.1 1970041..1971288(-) (cinA) [Paenalkalicoccus suaedae strain M4U3P1]
GTGAACGCTGAAATTATTGCTGTTGGCTCCGAGCTATTGCTTGGCCAAATAGATAATACAAATGCGAGTTTTCTATCAAG
GGAGCTTTCTTCAATCGGTATCAATGTATTTTATCATCAGGCCGTTGGTGATAATGAAGCTAGACTAACGTCAGTGTTAC
AAGCTAGCACGGAACGCTCTGACATCGTTATCGTAACTGGTGGATTAGGTCCAACAAAAGATGACCTAACGAAAGAAACT
GTCGCAAAATTAGTTAACAAAGAATTAGTTTATGACAACGAAACATACACGCGCTTAGAGGCGTTTTTTATAAGTCGTAA
TCGGACGATGACCGATAATAACAAAAAACAAGCGTTAATAGTGGAAGGTGCACATGTCTTGCAAAATGATGCAGGACTCG
CATGCGGGATGGCGATTAAGCACAATGATACTATTTTTGTACTGTTACCTGGACCTCCGAGTGAATTAAAGCCTATGGTA
AAGTCTTACGCACTTGCCTTTTTACAAAAAGAGATGGGCCAGCAGCATGTGATTGAGTCGCTGATCCTTCGTTTTTTTGA
GATTGGGGAGTCAAGACTAGTAGAAGAACTGGATGATCTTATTGAAGCTCAAACAAATCCTACTATTGCTCCTTTAGCTT
CTGATGGAGAGTGTATGCTCCGTCTAACTGTAAAAGGATCATCTACCCATGAAAACATGCAAAAACTCGATGCACTAAAA
GATACTATTTTAGATCGCGTTGGAGAGTATTGCTATGGGGTTGGTGAGCCGACACTTGAAGAAGTGACAGTGAACGAGCT
ACTGACAAAGAGCGCCACTGTATCGTCAGCAGAAAGTCTGACTGGTGGTTTGTTTGCAGAGCAGTTGACCTCTGTAACTG
GCACGTCAAAATGTTTTAAAGGTGGAACTATTTGCTACACAAACGAAGCAAAAGAGAGCTTTGGTGTGCCTGCATCTGTA
TTGGCAGAGTATGGCGCAATAAGTGAGCAGACAGCACAGCACCTTGCAGAACTTGCAAAAAAAACGTACGATTCAACGTA
CGCTGTTAGCATGACAGGAGTTGCTGGCCCGGATTCCTCTGAAAATAAACAGCCAGGTCTCGTTTATATTGGAATTGCAA
CTCCTAGTACGACGCACATTTACTCTATTCAAGCTGGAGGTAACAGACAGCGCGTTAGAGTCCTTGCTGCTAAGTACGCA
ATGTACTATCTATTAAAAGAGTTAAGAAAGAAAAAGGTGGATGACTAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(258-407)

Damage-inducible protein CinA KH domain (CinA_KH)

(182-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A859FES4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

49.268

98.795

0.487
  cinA Streptococcus mitis NCTC 12261

47.494

100

0.48
  cinA Streptococcus mitis SK321

47.255

100

0.477
  cinA Streptococcus pneumoniae TIGR4

47.017

100

0.475
  cinA Streptococcus pneumoniae Rx1

46.539

100

0.47
  cinA Streptococcus pneumoniae R6

46.539

100

0.47
  cinA Streptococcus pneumoniae D39

46.301

100

0.467
  cinA Streptococcus mutans UA159

45.7

98.072

0.448
  cinA Streptococcus suis isolate S10

39.853

98.554

0.393

Multiple sequence alignment