Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   FMM01_RS01370 Genome accession   NZ_CP041364
Coordinates   264668..265939 (+) Length   423 a.a.
NCBI ID   WP_150391488.1    Uniprot ID   -
Organism   Schleiferilactobacillus harbinensis strain NSMJ42     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 259668..270939
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FMM01_RS01350 (FMM01_01350) ymfI 260833..261561 (+) 729 WP_150391485.1 elongation factor P 5-aminopentanone reductase -
  FMM01_RS01355 (FMM01_01355) - 261653..262606 (+) 954 WP_150391486.1 helix-turn-helix domain-containing protein -
  FMM01_RS01360 (FMM01_01360) pgsA 262629..263216 (+) 588 WP_027827542.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  FMM01_RS01365 (FMM01_01365) cinA 263326..264558 (+) 1233 WP_150391487.1 competence/damage-inducible protein A Machinery gene
  FMM01_RS01370 (FMM01_01370) recA 264668..265939 (+) 1272 WP_150391488.1 recombinase RecA Machinery gene
  FMM01_RS01375 (FMM01_01375) rny 266486..268069 (+) 1584 WP_027827539.1 ribonuclease Y -
  FMM01_RS01380 (FMM01_01380) - 268215..269306 (+) 1092 WP_035439738.1 glycosyltransferase family 4 protein -
  FMM01_RS01385 (FMM01_01385) - 269386..270048 (-) 663 WP_027827538.1 YigZ family protein -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 45538.36 Da        Isoelectric Point: 6.1208

>NTDB_id=371645 FMM01_RS01370 WP_150391488.1 264668..265939(+) (recA) [Schleiferilactobacillus harbinensis strain NSMJ42]
MAVKNTKLKEVVELTDKQERKTALNDALKKIEKNFGKGAIMRMGDKADTQIRTISTGSLALDTALGVGGYPRGRIVEIYG
PESSGKTTVALHAVAEVQREGGTAAYIDAENALDPEYAKHLGVNIDDLLLSQPDTGEQGLEIADALVTSGAVDLVVVDSV
AALVPRAEIDGEMGDAHVGLQARLMSQALRKLSGSINKTKTIAIFINQIREKVGVMFGSPETTPGGRALKFYATIRLEVR
RSEQIKDGTDIIGNRTKIKVVKNKVAPPFKVAEVDIMYGKGISRTGELLDMAVEKDIVDKSGSWYSYNSDRIGQGRENAK
QYIADHPDMEAELRTKVRHAYGIDGAADPDAKDADDQAKDKDSKDTPKADKDAKGTRDTKSAATDAKKSESKDSAKDTPK
TKDTKAAADGESIDIFEGTDAKK

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=371645 FMM01_RS01370 WP_150391488.1 264668..265939(+) (recA) [Schleiferilactobacillus harbinensis strain NSMJ42]
TTGGCTGTTAAAAATACCAAGCTTAAAGAAGTCGTTGAATTAACCGACAAGCAAGAACGCAAGACTGCTTTGAATGATGC
TCTGAAGAAAATTGAAAAAAACTTCGGGAAAGGGGCCATTATGCGGATGGGCGATAAAGCCGATACGCAAATTCGGACCA
TTTCCACGGGCTCATTAGCCTTAGATACAGCACTGGGAGTCGGCGGCTACCCCCGCGGCCGGATCGTCGAAATTTACGGA
CCTGAATCATCCGGTAAGACGACGGTGGCGCTGCACGCAGTCGCTGAAGTACAGCGCGAAGGCGGTACGGCGGCGTATAT
CGACGCGGAAAACGCCTTGGACCCTGAATACGCTAAGCATTTGGGCGTCAACATTGATGATTTGCTGCTGTCCCAACCGG
ACACTGGCGAACAAGGCTTGGAAATTGCGGACGCGCTGGTCACCAGCGGCGCCGTGGATCTGGTCGTTGTCGACTCAGTG
GCAGCGTTAGTTCCGCGGGCTGAAATCGATGGTGAAATGGGCGATGCCCACGTTGGGCTGCAGGCCCGGTTGATGTCCCA
GGCATTGCGCAAGTTGTCTGGATCCATTAATAAGACAAAAACCATTGCTATTTTTATCAACCAGATCCGGGAAAAAGTCG
GTGTTATGTTCGGCAGCCCGGAAACGACTCCGGGCGGTCGGGCGCTGAAGTTCTACGCCACGATTCGGTTGGAAGTACGC
CGGTCAGAACAGATCAAAGACGGTACCGACATCATCGGCAACCGGACGAAGATCAAGGTTGTGAAGAACAAGGTTGCCCC
GCCGTTTAAGGTTGCCGAAGTCGACATTATGTACGGCAAGGGCATCTCCCGTACCGGCGAATTGCTGGATATGGCGGTCG
AGAAGGATATCGTGGATAAGAGCGGTTCCTGGTACTCTTATAATTCAGACCGGATCGGCCAAGGCCGGGAGAACGCGAAG
CAATATATTGCGGATCATCCGGACATGGAAGCCGAATTGCGGACTAAGGTCCGGCATGCTTACGGCATTGACGGTGCCGC
GGATCCGGATGCGAAGGATGCCGATGATCAGGCCAAGGATAAGGATTCTAAAGACACCCCTAAGGCCGATAAAGATGCCA
AGGGTACGAGGGACACCAAATCTGCCGCAACGGACGCGAAGAAGTCGGAAAGCAAAGACAGTGCGAAAGATACGCCGAAG
ACCAAGGATACGAAGGCAGCCGCGGATGGCGAGTCGATCGATATCTTTGAGGGTACGGACGCGAAGAAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(23-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

82.111

80.615

0.662
  recA Streptococcus mitis NCTC 12261

67.663

86.998

0.589
  recA Streptococcus mitis SK321

68.908

84.397

0.582
  recA Streptococcus pneumoniae R6

66.486

87.47

0.582
  recA Streptococcus pneumoniae Rx1

66.486

87.47

0.582
  recA Streptococcus pneumoniae D39

66.486

87.47

0.582
  recA Streptococcus pneumoniae TIGR4

66.486

87.47

0.582
  recA Streptococcus mutans UA159

65.684

88.18

0.579
  recA Streptococcus pyogenes NZ131

71.345

80.851

0.577
  recA Bacillus subtilis subsp. subtilis str. 168

73.62

77.069

0.567
  recA Lactococcus lactis subsp. cremoris KW2

71.733

77.778

0.558
  recA Pseudomonas stutzeri DSM 10701

60.526

80.851

0.489
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.883

77.069

0.485
  recA Ralstonia pseudosolanacearum GMI1000

65.176

73.995

0.482
  recA Glaesserella parasuis strain SC1401

55.956

85.343

0.478
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.661

78.723

0.478
  recA Vibrio cholerae strain A1552

62.422

76.123

0.475
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.422

76.123

0.475
  recA Acinetobacter baumannii D1279779

58.187

80.851

0.47
  recA Neisseria gonorrhoeae strain FA1090

62.658

74.704

0.468
  recA Neisseria gonorrhoeae MS11

62.658

74.704

0.468
  recA Neisseria gonorrhoeae MS11

62.658

74.704

0.468
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.55

77.305

0.468
  recA Acinetobacter baylyi ADP1

62.025

74.704

0.463
  recA Helicobacter pylori 26695

59.816

77.069

0.461
  recA Helicobacter pylori strain NCTC11637

59.816

77.069

0.461

Multiple sequence alignment