Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   FMM01_RS01365 Genome accession   NZ_CP041364
Coordinates   263326..264558 (+) Length   410 a.a.
NCBI ID   WP_150391487.1    Uniprot ID   -
Organism   Schleiferilactobacillus harbinensis strain NSMJ42     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 258326..269558
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FMM01_RS01345 (FMM01_01345) yfmH 259535..260836 (+) 1302 WP_150391484.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  FMM01_RS01350 (FMM01_01350) ymfI 260833..261561 (+) 729 WP_150391485.1 elongation factor P 5-aminopentanone reductase -
  FMM01_RS01355 (FMM01_01355) - 261653..262606 (+) 954 WP_150391486.1 helix-turn-helix domain-containing protein -
  FMM01_RS01360 (FMM01_01360) pgsA 262629..263216 (+) 588 WP_027827542.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  FMM01_RS01365 (FMM01_01365) cinA 263326..264558 (+) 1233 WP_150391487.1 competence/damage-inducible protein A Machinery gene
  FMM01_RS01370 (FMM01_01370) recA 264668..265939 (+) 1272 WP_150391488.1 recombinase RecA Machinery gene
  FMM01_RS01375 (FMM01_01375) rny 266486..268069 (+) 1584 WP_027827539.1 ribonuclease Y -
  FMM01_RS01380 (FMM01_01380) - 268215..269306 (+) 1092 WP_035439738.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 43235.32 Da        Isoelectric Point: 6.3033

>NTDB_id=371644 FMM01_RS01365 WP_150391487.1 263326..264558(+) (cinA) [Schleiferilactobacillus harbinensis strain NSMJ42]
MQAEIIAVGTEMLLGEITDTNSPYLARQLAQLGIDIYYQETVGDNPQRITALLQQASQRSDLVILSGGLGPTADDVTKRT
VAEFLHQPLVTNAQAKEKLTATAARLQHALTSNNLVQAQLPAGGEPLPNRTGLAVGSWNVMQGTIYVTLPGPPQEFKPMV
SEQLIPRLAQHTHKVLASTMLRFYGLTESVIATKLAPLIDAQTNPTIAIYYQFPDIAVRVTAQAADHAAAEQLVAPVAAQ
VKDLLGDAYYGTGEHGSLAQVVGQQLITRHLTITAAESLTAGEFQASLGTISGISAVFPGGFVTYAPAQKTAMIGVPAAT
IKQYGVVSRETAAAMAEGARAKVGTDYALGFTGVAGPDTLEGQPAGTVFIGLAGPQGTTVQEFHLLGSRNEVRARAVAWG
FKMLQNALKN

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=371644 FMM01_RS01365 WP_150391487.1 263326..264558(+) (cinA) [Schleiferilactobacillus harbinensis strain NSMJ42]
ATGCAAGCAGAGATCATCGCGGTCGGTACAGAAATGCTGTTGGGAGAAATCACCGATACCAACAGCCCGTATTTAGCCCG
GCAGCTGGCTCAATTGGGCATCGATATTTATTATCAGGAAACGGTGGGGGACAATCCCCAGCGAATCACGGCTTTGCTGC
AACAGGCCAGCCAGCGCAGCGACTTGGTCATTCTCAGCGGCGGTTTAGGCCCGACCGCCGATGATGTGACGAAACGTACG
GTAGCGGAGTTTCTGCATCAGCCGCTGGTGACTAACGCTCAGGCCAAGGAAAAATTAACGGCCACGGCAGCCCGGCTGCA
GCATGCATTAACCTCGAACAACCTGGTTCAGGCCCAATTACCGGCCGGCGGCGAGCCGCTGCCGAACCGGACCGGGCTCG
CGGTGGGCAGTTGGAATGTCATGCAGGGGACGATTTACGTGACGCTGCCCGGCCCGCCCCAAGAGTTCAAACCGATGGTC
AGCGAGCAGCTGATCCCCCGGCTGGCCCAGCATACGCATAAGGTGTTGGCGTCGACCATGCTGCGCTTTTATGGGCTGAC
GGAATCAGTGATCGCGACCAAGCTGGCACCGCTGATCGATGCCCAGACGAATCCGACGATCGCCATTTATTACCAATTTC
CAGATATTGCCGTGCGGGTCACCGCCCAAGCGGCGGACCATGCCGCGGCGGAACAGCTGGTGGCGCCGGTGGCCGCCCAG
GTGAAGGACTTGCTGGGCGATGCCTATTACGGTACTGGCGAACACGGCTCGTTGGCCCAGGTCGTGGGGCAGCAGCTGAT
TACGCGGCATTTGACGATCACGGCGGCGGAGAGCCTGACGGCGGGCGAATTTCAGGCGTCACTGGGGACCATTTCCGGTA
TTTCTGCCGTCTTTCCCGGCGGTTTTGTCACCTATGCCCCGGCTCAAAAAACAGCGATGATCGGCGTGCCGGCAGCCACG
ATTAAGCAGTACGGAGTGGTCAGCCGGGAAACGGCGGCGGCGATGGCTGAGGGTGCCCGGGCTAAAGTCGGTACTGATTA
CGCCCTGGGCTTCACCGGCGTGGCCGGACCCGATACCTTGGAAGGACAGCCGGCCGGCACAGTATTCATCGGTTTGGCCG
GGCCCCAGGGCACCACGGTGCAGGAGTTCCATTTGCTGGGCAGCCGTAATGAAGTCCGCGCCCGGGCCGTGGCTTGGGGA
TTCAAGATGCTGCAGAACGCCTTAAAAAATTAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(257-407)

Damage-inducible protein CinA KH domain (CinA_KH)

(178-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis NCTC 12261

49.64

100

0.505
  cinA Streptococcus mitis SK321

49.161

100

0.5
  cinA Streptococcus pneumoniae Rx1

49.161

100

0.5
  cinA Streptococcus pneumoniae R6

49.161

100

0.5
  cinA Streptococcus pneumoniae TIGR4

49.161

100

0.5
  cinA Streptococcus pneumoniae D39

48.921

100

0.498
  cinA Streptococcus mutans UA159

47.087

100

0.473
  cinA Bacillus subtilis subsp. subtilis str. 168

39.024

100

0.39
  cinA Streptococcus suis isolate S10

37.346

99.268

0.371

Multiple sequence alignment