Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   FKV23_RS06215 Genome accession   NZ_CP041242
Coordinates   1413890..1414921 (+) Length   343 a.a.
NCBI ID   WP_141623074.1    Uniprot ID   A0A514BQQ1
Organism   Marilutibacter alkalisoli strain SJ-36     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1408890..1419921
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FKV23_RS06200 (FKV23_06200) - 1409559..1412219 (+) 2661 WP_244244113.1 TonB-dependent receptor -
  FKV23_RS06205 (FKV23_06205) - 1412458..1412958 (+) 501 WP_141623072.1 CinA family protein -
  FKV23_RS06210 (FKV23_06210) lexA 1413015..1413665 (+) 651 WP_141623073.1 transcriptional repressor LexA -
  FKV23_RS06215 (FKV23_06215) recA 1413890..1414921 (+) 1032 WP_141623074.1 recombinase RecA Machinery gene
  FKV23_RS06220 (FKV23_06220) recX 1414958..1415485 (+) 528 WP_141623075.1 recombination regulator RecX -
  FKV23_RS06225 (FKV23_06225) alaS 1415745..1418420 (+) 2676 WP_141623076.1 alanine--tRNA ligase -
  FKV23_RS06230 (FKV23_06230) csrA 1418562..1418762 (+) 201 WP_141623077.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 36915.39 Da        Isoelectric Point: 4.9608

>NTDB_id=370768 FKV23_RS06215 WP_141623074.1 1413890..1414921(+) (recA) [Marilutibacter alkalisoli strain SJ-36]
MDENKKRALSAALGQIEKQFGKGSVMRMGDRVVEAAEVIGTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQTIA
QCQKAGGTAAFIDAEHALDPIYAGKLGVNVDELLLSQPDTGEQALEIADMLVRSGAVDMVVIDSVAALTPRAEIEGEMGD
QLPGLQARLMSQALRKLTGNIKRSNCMVIFINQLRMKIGVMMPGQSPEVTSGGNALKFYASVRLDIRRIGSIKKGDEIIG
NQTKIKVVKNKLAPPFKQVITEILYGEGISREGELIDMGVNAKLVDKAGAWYSYGDERIGQGKENARNYLKENPEVAVRL
EEALREQFVPAEANRDGDDDAEG

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=370768 FKV23_RS06215 WP_141623074.1 1413890..1414921(+) (recA) [Marilutibacter alkalisoli strain SJ-36]
ATGGACGAGAACAAGAAGCGCGCCCTTTCCGCCGCCCTGGGCCAGATCGAGAAGCAGTTCGGCAAGGGCTCGGTCATGCG
CATGGGCGACCGCGTGGTCGAAGCGGCCGAGGTGATCGGCACCGGCTCGCTGATGCTCGACATCGCGCTCGGTATCGGCG
GCCTGCCCAAGGGCCGTGTGGTCGAGATCTACGGGCCGGAGTCCTCGGGCAAGACCACCCTGACCCTGCAGACCATCGCC
CAGTGCCAGAAGGCCGGCGGGACCGCCGCCTTCATCGACGCCGAGCACGCGCTCGACCCGATCTATGCGGGCAAGCTCGG
CGTCAACGTCGATGAGCTGCTGCTGTCGCAGCCCGATACCGGCGAGCAGGCGCTGGAGATCGCCGACATGCTGGTGCGTT
CGGGCGCGGTCGACATGGTCGTGATCGACTCGGTCGCCGCGCTGACCCCGCGCGCCGAGATCGAGGGCGAGATGGGCGAC
CAGCTGCCCGGCCTGCAGGCCCGCCTGATGAGCCAGGCGCTGCGCAAGCTGACCGGCAACATCAAGCGCAGCAACTGCAT
GGTGATCTTCATCAACCAGTTGCGCATGAAGATCGGCGTGATGATGCCGGGCCAGAGCCCCGAGGTGACTTCCGGCGGCA
ACGCGCTCAAGTTCTATGCCTCGGTGCGCCTGGATATCCGCCGCATCGGCTCGATCAAGAAGGGCGACGAGATCATCGGC
AACCAGACCAAGATCAAGGTGGTCAAGAACAAGCTGGCGCCGCCATTCAAACAGGTCATCACCGAGATCCTGTACGGCGA
GGGCATCTCCCGCGAAGGCGAGCTGATCGACATGGGCGTGAACGCCAAGCTGGTCGACAAGGCCGGTGCCTGGTACAGCT
ACGGCGACGAGCGGATCGGGCAGGGCAAGGAGAACGCCCGAAACTACCTGAAGGAGAACCCGGAAGTGGCGGTCAGGCTC
GAGGAGGCCCTGCGCGAACAGTTCGTCCCGGCCGAAGCCAACCGTGACGGGGATGATGACGCCGAGGGCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A514BQQ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

70.882

99.125

0.703
  recA Pseudomonas stutzeri DSM 10701

70.175

99.708

0.7
  recA Acinetobacter baumannii D1279779

71.557

97.376

0.697
  recA Vibrio cholerae strain A1552

71.084

96.793

0.688
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.084

96.793

0.688
  recA Ralstonia pseudosolanacearum GMI1000

74.76

91.254

0.682
  recA Glaesserella parasuis strain SC1401

68.731

94.169

0.647
  recA Neisseria gonorrhoeae MS11

68.098

95.044

0.647
  recA Neisseria gonorrhoeae MS11

68.098

95.044

0.647
  recA Neisseria gonorrhoeae strain FA1090

68.098

95.044

0.647
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.974

100

0.63
  recA Helicobacter pylori 26695

61.31

97.959

0.601
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.862

97.085

0.601
  recA Helicobacter pylori strain NCTC11637

61.012

97.959

0.598
  recA Bacillus subtilis subsp. subtilis str. 168

62.462

94.752

0.592
  recA Latilactobacillus sakei subsp. sakei 23K

63.24

93.586

0.592
  recA Streptococcus mitis SK321

61.89

95.627

0.592
  recA Streptococcus pneumoniae D39

61.585

95.627

0.589
  recA Streptococcus pneumoniae TIGR4

61.585

95.627

0.589
  recA Streptococcus pneumoniae R6

61.585

95.627

0.589
  recA Streptococcus mitis NCTC 12261

61.585

95.627

0.589
  recA Streptococcus pneumoniae Rx1

61.585

95.627

0.589
  recA Streptococcus mutans UA159

60.909

96.21

0.586
  recA Streptococcus pyogenes NZ131

60

96.21

0.577
  recA Lactococcus lactis subsp. cremoris KW2

60.308

94.752

0.571
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.394

96.21

0.571

Multiple sequence alignment