Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   BMD_RS19875 Genome accession   NC_014103
Coordinates   3961887..3962924 (-) Length   345 a.a.
NCBI ID   WP_013058804.1    Uniprot ID   A0A8D3WWJ0
Organism   Priestia megaterium DSM 319     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3956887..3967924
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BMD_RS26620 - 3957330..3957506 (-) 177 WP_155660653.1 hypothetical protein -
  BMD_RS19855 (BMD_4102) - 3957691..3958608 (-) 918 WP_013084743.1 dipeptidase -
  BMD_RS19860 (BMD_4103) spoVS 3958684..3958944 (-) 261 WP_003181955.1 stage V sporulation protein SpoVS -
  BMD_RS19865 (BMD_4104) - 3959168..3959965 (-) 798 WP_013084744.1 TIGR00282 family metallophosphoesterase -
  BMD_RS19870 (BMD_4105) rny 3960047..3961606 (-) 1560 WP_013058803.1 ribonuclease Y -
  BMD_RS19875 (BMD_4106) recA 3961887..3962924 (-) 1038 WP_013058804.1 recombinase RecA Machinery gene
  BMD_RS19880 (BMD_4107) cinA 3963124..3964365 (-) 1242 WP_013084746.1 competence/damage-inducible protein A Machinery gene
  BMD_RS19885 (BMD_4108) pgsA 3964382..3964966 (-) 585 WP_013058806.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  BMD_RS19890 (BMD_4109) - 3965111..3966094 (-) 984 WP_228459493.1 RodZ domain-containing protein -
  BMD_RS19895 (BMD_4110) - 3966107..3966898 (-) 792 WP_013058808.1 DUF3388 domain-containing protein -
  BMD_RS19900 (BMD_4111) - 3967112..3967372 (-) 261 WP_013058809.1 DUF3243 domain-containing protein -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37395.27 Da        Isoelectric Point: 4.8279

>NTDB_id=37044 BMD_RS19875 WP_013058804.1 3961887..3962924(-) (recA) [Priestia megaterium DSM 319]
MNDRQAALDMALKQIEKQFGKGSIMKLGEQTEKRISTIPSGSLALDIALGVGGYPRGRVVEVYGPESSGKTTVALHAIAE
VQQQGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVVDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDIVGNKT
RIKVVKNKVAPPFRAAEVDIMYGEGISKEGEILDIASELDIVQKSGSWYSYNDERLGQGRENAKQFLKENTDIRQEIAGQ
VREHHGLDQDGEPAPEDDDQGDLNI

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=37044 BMD_RS19875 WP_013058804.1 3961887..3962924(-) (recA) [Priestia megaterium DSM 319]
GTGAACGATCGTCAAGCAGCCCTTGATATGGCTTTAAAACAAATTGAAAAGCAATTTGGTAAAGGTTCAATTATGAAATT
AGGTGAACAAACGGAAAAAAGAATTTCTACAATTCCAAGTGGTTCATTAGCGTTAGATATAGCCTTAGGTGTAGGTGGAT
ATCCACGTGGACGTGTAGTTGAAGTATATGGTCCAGAAAGCTCAGGTAAAACAACAGTTGCTCTTCATGCGATTGCAGAA
GTTCAACAGCAGGGCGGACAGGCTGCATTTATCGATGCGGAGCACGCGTTAGATCCTGTATATGCTCAAAAATTAGGTGT
GAATATTGATGAGCTATTATTATCTCAGCCTGATACGGGAGAACAAGCTTTAGAAATCGCTGAAGCTTTAGTTCGAAGCG
GTGCAGTAGATATTATCGTTGTTGACTCAGTAGCAGCATTAGTGCCAAAAGCGGAAATTGAAGGAGAAATGGGAGACTCT
CACGTGGGTCTACAAGCTCGTTTAATGTCTCAAGCATTGCGTAAACTATCTGGAGCTATCAATAAGTCTAAAACAATCGC
TATCTTTATTAACCAAATTCGTGAAAAAGTCGGCGTTATGTTTGGTAATCCTGAAACAACTCCTGGTGGACGTGCGCTTA
AATTCTATTCTTCAGTGCGTCTAGAAGTGCGTCGTGCAGAGCAGTTAAAGCAAGGAAACGATATTGTAGGTAACAAAACA
AGAATTAAAGTTGTGAAAAACAAAGTAGCGCCGCCTTTCCGTGCTGCTGAAGTAGATATTATGTACGGAGAAGGTATTTC
AAAAGAGGGTGAAATTTTGGATATCGCTTCTGAACTAGATATTGTTCAAAAAAGTGGATCTTGGTATTCATATAATGACG
AGCGTCTAGGTCAAGGCCGTGAAAATGCAAAACAATTCTTAAAAGAAAATACTGATATTCGTCAGGAAATTGCGGGACAA
GTTCGTGAACATCATGGTTTAGATCAAGATGGAGAGCCAGCTCCTGAGGATGACGATCAAGGCGATTTAAATATTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

90.332

95.942

0.867
  recA Latilactobacillus sakei subsp. sakei 23K

74.184

97.681

0.725
  recA Streptococcus pneumoniae D39

69.591

99.13

0.69
  recA Streptococcus pneumoniae Rx1

69.591

99.13

0.69
  recA Streptococcus pneumoniae R6

69.591

99.13

0.69
  recA Streptococcus pneumoniae TIGR4

69.591

99.13

0.69
  recA Streptococcus mitis NCTC 12261

70.118

97.971

0.687
  recA Streptococcus mitis SK321

70.118

97.971

0.687
  recA Streptococcus mutans UA159

65.634

100

0.675
  recA Lactococcus lactis subsp. cremoris KW2

67.857

97.391

0.661
  recA Streptococcus pyogenes NZ131

68.693

95.362

0.655
  recA Neisseria gonorrhoeae strain FA1090

63.158

99.13

0.626
  recA Neisseria gonorrhoeae MS11

63.158

99.13

0.626
  recA Neisseria gonorrhoeae MS11

63.158

99.13

0.626
  recA Ralstonia pseudosolanacearum GMI1000

66.562

91.884

0.612
  recA Vibrio cholerae strain A1552

65.109

93.043

0.606
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.109

93.043

0.606
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.111

99.13

0.606
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.11

95.072

0.6
  recA Acinetobacter baumannii D1279779

60.526

99.13

0.6
  recA Helicobacter pylori strain NCTC11637

61.012

97.391

0.594
  recA Helicobacter pylori 26695

61.012

97.391

0.594
  recA Pseudomonas stutzeri DSM 10701

63.75

92.754

0.591
  recA Acinetobacter baylyi ADP1

62.848

93.623

0.588
  recA Glaesserella parasuis strain SC1401

63.323

92.464

0.586
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.371

93.043

0.571

Multiple sequence alignment