Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   BMD_RS19880 Genome accession   NC_014103
Coordinates   3963124..3964365 (-) Length   413 a.a.
NCBI ID   WP_013084746.1    Uniprot ID   D5DKU1
Organism   Priestia megaterium DSM 319     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3958124..3969365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BMD_RS19860 (BMD_4103) spoVS 3958684..3958944 (-) 261 WP_003181955.1 stage V sporulation protein SpoVS -
  BMD_RS19865 (BMD_4104) - 3959168..3959965 (-) 798 WP_013084744.1 TIGR00282 family metallophosphoesterase -
  BMD_RS19870 (BMD_4105) rny 3960047..3961606 (-) 1560 WP_013058803.1 ribonuclease Y -
  BMD_RS19875 (BMD_4106) recA 3961887..3962924 (-) 1038 WP_013058804.1 recombinase RecA Machinery gene
  BMD_RS19880 (BMD_4107) cinA 3963124..3964365 (-) 1242 WP_013084746.1 competence/damage-inducible protein A Machinery gene
  BMD_RS19885 (BMD_4108) pgsA 3964382..3964966 (-) 585 WP_013058806.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  BMD_RS19890 (BMD_4109) - 3965111..3966094 (-) 984 WP_228459493.1 RodZ domain-containing protein -
  BMD_RS19895 (BMD_4110) - 3966107..3966898 (-) 792 WP_013058808.1 DUF3388 domain-containing protein -
  BMD_RS19900 (BMD_4111) - 3967112..3967372 (-) 261 WP_013058809.1 DUF3243 domain-containing protein -
  BMD_RS19905 (BMD_4112) ymfI 3967438..3968163 (-) 726 WP_013084748.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 44923.08 Da        Isoelectric Point: 4.9963

>NTDB_id=37045 BMD_RS19880 WP_013084746.1 3963124..3964365(-) (cinA) [Priestia megaterium DSM 319]
MMNAEIIGVGSELLLGQIANTNAQYLSKKLAELGINVYYHTVVGDNAQRLKEVIATAQTRAELIIFTGGLGPTKDDLTKE
TIASVLGVELTTNAEALESIEAYFKQSNRIMTPNNKKQAIVLEGSAVLPNDYGMAPGMGLTVEGKHYMLFPGPPKELYPM
YESYGQEFLAQKLELKESIESRVLRFFGIGESQLETEIEDLLDAQTNPTIAPLAGDGEVTLRLTAKHADAAEAQRMLDEV
EKTISERVGEYLYGYEATSLHNELVKELTAQGLTIASAESLTGGLFSERLTSVSGAGEAVKGSLVAYHYEIKQNILGVSE
HTLNQYGAVSEQCAAEMAQRIQQLCKTDIGIGFTGVAGPSKQEGHPVGTVYIGVAYKDQAPQVYRLQLSGSRQGIRSRTV
NYGCHYVLKMIKK

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=37045 BMD_RS19880 WP_013084746.1 3963124..3964365(-) (cinA) [Priestia megaterium DSM 319]
ATGATGAACGCTGAAATTATTGGAGTCGGCTCTGAGCTGCTGCTTGGACAAATTGCCAATACAAACGCTCAGTATTTATC
GAAAAAATTAGCCGAACTTGGAATTAATGTTTACTATCATACGGTAGTAGGAGATAATGCACAGCGCTTAAAAGAAGTGA
TTGCTACAGCTCAAACGCGTGCAGAGTTAATTATTTTCACAGGCGGGCTTGGTCCTACAAAAGATGATTTAACAAAAGAA
ACAATTGCGAGTGTGCTAGGAGTAGAGCTGACAACAAATGCAGAAGCACTTGAAAGCATTGAAGCCTATTTCAAACAATC
AAATCGTATCATGACACCTAACAATAAAAAACAGGCAATTGTGCTAGAAGGTTCGGCAGTGCTCCCTAACGATTACGGAA
TGGCTCCAGGTATGGGGCTTACGGTAGAGGGAAAACACTATATGCTATTCCCCGGGCCTCCAAAAGAGCTTTATCCAATG
TATGAATCGTATGGTCAAGAATTTTTAGCTCAAAAGCTTGAATTAAAAGAAAGTATTGAATCACGCGTTCTTCGCTTTTT
CGGAATAGGGGAATCACAGCTTGAGACGGAAATTGAAGATTTGCTTGATGCGCAAACCAATCCGACGATCGCGCCGCTAG
CAGGAGATGGAGAAGTGACGCTTCGCTTAACTGCTAAGCACGCTGATGCTGCTGAAGCACAGCGCATGTTAGACGAAGTG
GAAAAAACCATTTCAGAGCGCGTAGGCGAGTATTTATATGGATACGAAGCAACTTCTTTACATAATGAATTGGTAAAAGA
ATTAACGGCACAAGGATTAACGATTGCTTCAGCCGAAAGTTTAACCGGCGGTTTATTCAGCGAACGTTTAACATCTGTTT
CAGGTGCTGGAGAAGCTGTAAAAGGCAGCCTGGTCGCCTATCATTATGAAATCAAGCAAAATATTCTCGGAGTGAGCGAA
CACACGCTGAATCAGTACGGAGCCGTTAGCGAGCAGTGCGCGGCTGAAATGGCTCAGCGTATTCAACAGTTATGCAAAAC
GGATATTGGCATCGGGTTTACAGGTGTAGCTGGACCCTCCAAACAAGAAGGACATCCTGTAGGAACAGTATATATAGGGG
TAGCCTATAAAGATCAAGCTCCTCAAGTTTACAGACTGCAGCTATCTGGAAGCCGCCAGGGGATTCGTTCACGAACGGTT
AATTATGGCTGTCATTACGTATTAAAGATGATAAAGAAATAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(6-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)

Competence-damaged protein (CinA)

(258-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D5DKU1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

59.512

99.274

0.591
  cinA Streptococcus mitis NCTC 12261

46.905

100

0.477
  cinA Streptococcus pneumoniae TIGR4

46.19

100

0.47
  cinA Streptococcus mitis SK321

46.19

100

0.47
  cinA Streptococcus pneumoniae Rx1

45.714

100

0.465
  cinA Streptococcus pneumoniae R6

45.714

100

0.465
  cinA Streptococcus pneumoniae D39

45.476

100

0.462
  cinA Streptococcus mutans UA159

44.634

99.274

0.443

Multiple sequence alignment