Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   BTUS_RS07980 Genome accession   NC_014098
Coordinates   1617420..1618475 (+) Length   351 a.a.
NCBI ID   WP_013075602.1    Uniprot ID   D5WPQ5
Organism   Kyrpidia tusciae DSM 2912     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1612420..1623475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BTUS_RS07960 (Btus_1600) rimO 1612439..1613767 (+) 1329 WP_013075598.1 30S ribosomal protein S12 methylthiotransferase RimO -
  BTUS_RS07965 (Btus_1601) pgsA 1613768..1614349 (+) 582 WP_013075599.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  BTUS_RS07970 (Btus_1602) cinA 1614393..1615664 (+) 1272 WP_013075600.1 competence/damage-inducible protein A Machinery gene
  BTUS_RS07975 (Btus_1603) - 1615669..1617249 (+) 1581 WP_013075601.1 DEAD/DEAH box helicase -
  BTUS_RS07980 (Btus_1604) recA 1617420..1618475 (+) 1056 WP_013075602.1 recombinase RecA Machinery gene
  BTUS_RS07985 (Btus_1605) - 1618468..1618953 (+) 486 WP_013075603.1 regulatory protein RecX -
  BTUS_RS07990 (Btus_1606) rny 1619132..1620661 (+) 1530 WP_013075604.1 ribonuclease Y -
  BTUS_RS07995 (Btus_1607) - 1620706..1621518 (+) 813 WP_013075605.1 TIGR00282 family metallophosphoesterase -
  BTUS_RS08000 (Btus_1608) spoVS 1621645..1621905 (+) 261 WP_013075606.1 stage V sporulation protein SpoVS -
  BTUS_RS08005 (Btus_1609) - 1622012..1622968 (+) 957 WP_013075607.1 dipeptidase -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 37642.00 Da        Isoelectric Point: 5.1992

>NTDB_id=36998 BTUS_RS07980 WP_013075602.1 1617420..1618475(+) (recA) [Kyrpidia tusciae DSM 2912]
MADRKAALDMALRQIEKQFGKGSIMKLGEAQASMNVEVVSTGALALDIALGVGGFPRGRVIEIYGPESSGKTTVALHAIA
EVQKLGGQAAFIDAEHALDPVYARNLGVNIDELLISQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAELEGDMGD
SHVGLQARLMSQALRKLSGAISKSRTIAIFINQIREKVGVMFGNPETTTGGRALKFYSSVRLEVRRAEALKQGNELIGNR
TRIKVVKNKVAPPFKQADVDIMFGEGISREGSIVDLGVEMDVIEKSGAWYSFEGERLGQGRENAKQFLKEHPEIADRIEG
KIRSMCHAEGSAGVRPASGLIGSDEGEFFDE

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=36998 BTUS_RS07980 WP_013075602.1 1617420..1618475(+) (recA) [Kyrpidia tusciae DSM 2912]
GTGGCGGATCGGAAGGCGGCACTGGACATGGCGCTGCGCCAGATTGAGAAACAATTCGGGAAAGGTTCGATTATGAAACT
GGGAGAGGCCCAGGCGAGTATGAACGTCGAAGTGGTCTCCACCGGCGCTTTGGCGTTAGACATTGCTTTGGGGGTCGGGG
GATTCCCCCGGGGGCGTGTGATCGAGATTTACGGTCCGGAGTCTTCGGGCAAGACGACGGTGGCTTTGCACGCCATCGCC
GAAGTACAGAAGTTGGGCGGACAAGCGGCGTTTATCGATGCCGAACACGCCTTGGACCCCGTGTATGCCCGCAATCTTGG
CGTCAACATCGATGAGCTGTTGATTTCCCAACCGGATACCGGGGAACAAGCTCTGGAGATCGCCGAGGCGTTGGTGCGCA
GCGGCGCGGTGGATATTATTGTGATTGACTCGGTGGCGGCGCTGGTTCCCAAAGCCGAACTGGAGGGGGACATGGGCGAT
TCCCACGTGGGTCTGCAGGCCAGGCTCATGTCCCAAGCTTTGCGTAAGCTTTCCGGGGCGATTTCCAAGTCCCGGACGAT
CGCGATTTTTATCAACCAGATTCGGGAGAAAGTCGGCGTCATGTTCGGCAATCCCGAGACCACCACCGGTGGGCGGGCGC
TGAAGTTTTACTCCTCAGTGCGCCTGGAAGTGCGGCGGGCCGAGGCCCTTAAACAAGGAAACGAACTGATCGGAAACCGG
ACTCGGATCAAGGTGGTAAAAAACAAGGTCGCCCCTCCTTTTAAACAAGCGGATGTGGACATCATGTTCGGGGAAGGAAT
CTCACGGGAGGGCAGCATTGTCGATCTGGGAGTGGAGATGGATGTCATCGAAAAGAGCGGGGCCTGGTATTCCTTCGAAG
GTGAACGATTGGGCCAGGGCCGGGAAAACGCCAAGCAATTTCTAAAGGAACACCCGGAGATCGCCGATCGTATCGAAGGA
AAGATTCGCAGCATGTGCCACGCCGAGGGCTCGGCGGGAGTCCGCCCCGCATCGGGCTTGATTGGGTCGGACGAAGGTGA
GTTTTTCGATGAGTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D5WPQ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

80.805

92.023

0.744
  recA Latilactobacillus sakei subsp. sakei 23K

72.671

91.738

0.667
  recA Glaesserella parasuis strain SC1401

63.248

100

0.632
  recA Streptococcus mutans UA159

68

92.593

0.63
  recA Streptococcus pneumoniae Rx1

67.584

93.162

0.63
  recA Streptococcus pneumoniae TIGR4

67.584

93.162

0.63
  recA Streptococcus pneumoniae R6

67.584

93.162

0.63
  recA Streptococcus pneumoniae D39

67.584

93.162

0.63
  recA Streptococcus pyogenes NZ131

67.385

92.593

0.624
  recA Lactococcus lactis subsp. cremoris KW2

66.972

93.162

0.624
  recA Streptococcus mitis NCTC 12261

66.871

92.877

0.621
  recA Ralstonia pseudosolanacearum GMI1000

70.227

88.034

0.618
  recA Neisseria gonorrhoeae MS11

66.361

93.162

0.618
  recA Neisseria gonorrhoeae strain FA1090

66.361

93.162

0.618
  recA Neisseria gonorrhoeae MS11

66.361

93.162

0.618
  recA Streptococcus mitis SK321

66.258

92.877

0.615
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.563

92.023

0.613
  recA Vibrio cholerae strain A1552

66.563

92.023

0.613
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.134

93.732

0.601
  recA Acinetobacter baylyi ADP1

62.048

94.587

0.587
  recA Acinetobacter baumannii D1279779

61.934

94.302

0.584
  recA Pseudomonas stutzeri DSM 10701

63.354

91.738

0.581
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.385

93.162

0.581
  recA Helicobacter pylori strain NCTC11637

63.043

91.738

0.578
  recA Helicobacter pylori 26695

62.733

91.738

0.575
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.241

94.587

0.57

Multiple sequence alignment