Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   BTUS_RS07970 Genome accession   NC_014098
Coordinates   1614393..1615664 (+) Length   423 a.a.
NCBI ID   WP_013075600.1    Uniprot ID   D5WPQ3
Organism   Kyrpidia tusciae DSM 2912     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1609393..1620664
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BTUS_RS07940 (Btus_1596) - 1609438..1610202 (+) 765 WP_013075594.1 DUF3388 domain-containing protein -
  BTUS_RS07945 (Btus_1597) - 1610229..1611023 (+) 795 WP_013075595.1 helix-turn-helix domain-containing protein -
  BTUS_RS07950 (Btus_1598) - 1611111..1611707 (+) 597 WP_013075596.1 YhcN/YlaJ family sporulation lipoprotein -
  BTUS_RS07955 (Btus_1599) - 1611859..1612350 (+) 492 WP_013075597.1 YajQ family cyclic di-GMP-binding protein -
  BTUS_RS07960 (Btus_1600) rimO 1612439..1613767 (+) 1329 WP_013075598.1 30S ribosomal protein S12 methylthiotransferase RimO -
  BTUS_RS07965 (Btus_1601) pgsA 1613768..1614349 (+) 582 WP_013075599.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  BTUS_RS07970 (Btus_1602) cinA 1614393..1615664 (+) 1272 WP_013075600.1 competence/damage-inducible protein A Machinery gene
  BTUS_RS07975 (Btus_1603) - 1615669..1617249 (+) 1581 WP_013075601.1 DEAD/DEAH box helicase -
  BTUS_RS07980 (Btus_1604) recA 1617420..1618475 (+) 1056 WP_013075602.1 recombinase RecA Machinery gene
  BTUS_RS07985 (Btus_1605) - 1618468..1618953 (+) 486 WP_013075603.1 regulatory protein RecX -
  BTUS_RS07990 (Btus_1606) rny 1619132..1620661 (+) 1530 WP_013075604.1 ribonuclease Y -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 45674.29 Da        Isoelectric Point: 6.5162

>NTDB_id=36997 BTUS_RS07970 WP_013075600.1 1614393..1615664(+) (cinA) [Kyrpidia tusciae DSM 2912]
MKAEIIAVGTELLLGQIANTNARFVSEQLALVGVGVYFHTVVGDNRGRLLSVLQTARQRSDLVILCGGLGPTEDDLTRET
VAEFLGRPLELHPEALRAVEGYFSGLGRDMPENNRRQAMVIQGGNMIPNPRGTAPGQYVEAEGRRYVLLPGPPTEFEPMV
RESVIPLVQTWMGGNETIRSRVLRLYGIGESHLAERIADLLAAQSNPTLAPLAAEGEVTLRLTARAASEKEAWERIAPLE
AELRRRLGRYIYGVDAETLEVAAGRVLQARGMTVATAESCTGGLLGEMITNVPGSSRYFVGGVISYSNDVKKAVLGVSGE
ILERLGAVSEPVAIQMAQGVAEHLGADWGIGITGIAGPDGGTETKPVGLVYIAVHHRNADPWVKEFRFRGDRRQVRIRAA
KAALFALWRKVGAMDEGLSPAER

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=36997 BTUS_RS07970 WP_013075600.1 1614393..1615664(+) (cinA) [Kyrpidia tusciae DSM 2912]
ATGAAGGCGGAGATCATCGCTGTGGGTACGGAACTCTTGCTGGGGCAGATTGCCAACACCAACGCCCGGTTCGTTTCGGA
ACAATTGGCTCTGGTCGGGGTTGGGGTATACTTCCATACAGTGGTGGGGGATAACCGGGGCAGGCTGTTGAGTGTGTTAC
AGACGGCCCGGCAGCGATCCGATCTCGTGATCTTGTGCGGCGGGTTGGGGCCCACCGAGGACGACTTGACCCGGGAGACG
GTGGCGGAGTTTCTCGGGCGGCCTTTAGAGCTTCACCCGGAAGCGCTTCGTGCGGTGGAAGGATACTTTTCTGGGTTGGG
CCGGGACATGCCGGAAAACAATCGCCGCCAGGCCATGGTCATTCAGGGCGGGAACATGATTCCCAATCCCCGGGGAACGG
CGCCGGGACAGTATGTGGAGGCGGAGGGGCGGCGGTACGTCCTTTTACCCGGCCCCCCCACGGAGTTCGAACCCATGGTC
CGGGAATCGGTGATTCCGTTGGTGCAAACCTGGATGGGCGGGAACGAAACCATTCGTTCCCGAGTGCTTCGCCTTTACGG
GATCGGCGAATCACACCTGGCGGAACGGATCGCCGATTTGTTGGCCGCCCAAAGTAACCCAACTCTGGCCCCTTTGGCCG
CCGAAGGGGAGGTTACGCTCCGGTTAACCGCCCGGGCTGCCTCGGAAAAAGAGGCGTGGGAACGGATCGCTCCGCTGGAG
GCAGAGCTGCGCCGGCGCTTGGGGCGATATATCTACGGCGTCGACGCGGAAACCCTGGAGGTGGCCGCAGGTCGAGTTTT
ACAAGCCCGAGGAATGACCGTTGCCACCGCGGAGAGCTGCACCGGGGGGCTCCTGGGAGAGATGATCACCAACGTTCCGG
GGAGTTCCCGGTATTTTGTCGGCGGAGTGATATCGTACAGCAATGATGTGAAGAAAGCGGTTTTGGGCGTTTCCGGGGAG
ATCCTGGAGCGTCTCGGAGCGGTGAGCGAACCGGTGGCCATCCAGATGGCTCAGGGAGTTGCCGAGCATCTCGGAGCGGA
CTGGGGGATTGGAATTACCGGGATCGCCGGACCGGATGGCGGTACGGAGACAAAACCGGTGGGTTTGGTGTATATCGCCG
TGCATCATCGGAATGCGGATCCCTGGGTAAAAGAATTTCGATTTCGTGGAGACCGCCGCCAAGTGCGCATTCGGGCCGCC
AAGGCGGCACTGTTCGCCCTGTGGCGAAAAGTCGGGGCGATGGATGAAGGGTTAAGTCCTGCAGAAAGGTGA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(257-410)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D5WPQ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

51.25

94.563

0.485
  cinA Streptococcus pneumoniae TIGR4

44.917

100

0.449
  cinA Streptococcus pneumoniae R6

44.681

100

0.447
  cinA Streptococcus pneumoniae Rx1

44.681

100

0.447
  cinA Streptococcus pneumoniae D39

44.444

100

0.444
  cinA Streptococcus mitis SK321

43.256

100

0.44
  cinA Streptococcus mitis NCTC 12261

43.427

100

0.437
  cinA Streptococcus mutans UA159

42.926

98.582

0.423
  cinA Streptococcus suis isolate S10

42.216

89.598

0.378

Multiple sequence alignment