Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   FJM75_RS01545 Genome accession   NZ_CP041063
Coordinates   304034..305080 (+) Length   348 a.a.
NCBI ID   WP_098443418.1    Uniprot ID   -
Organism   Bacillus sp. Cs-700     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 299034..310080
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FJM75_RS01525 - 299166..300113 (+) 948 WP_165995421.1 RodZ domain-containing protein -
  FJM75_RS01530 pgsA 300275..300853 (+) 579 WP_098443415.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  FJM75_RS01535 cinA 301038..302267 (+) 1230 WP_165995423.1 competence/damage-inducible protein A Machinery gene
  FJM75_RS01540 - 302280..303848 (+) 1569 WP_165995425.1 DEAD/DEAH box helicase -
  FJM75_RS01545 recA 304034..305080 (+) 1047 WP_098443418.1 recombinase RecA Machinery gene
  FJM75_RS01550 rny 305458..307020 (+) 1563 WP_098443419.1 ribonuclease Y -
  FJM75_RS01555 - 307126..307920 (+) 795 WP_098443420.1 TIGR00282 family metallophosphoesterase -
  FJM75_RS01560 spoVS 308022..308282 (+) 261 WP_044391806.1 stage V sporulation protein SpoVS -
  FJM75_RS01565 - 308371..309294 (+) 924 WP_165995427.1 dipeptidase -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37532.68 Da        Isoelectric Point: 5.2123

>NTDB_id=369227 FJM75_RS01545 WP_098443418.1 304034..305080(+) (recA) [Bacillus sp. Cs-700]
MSDRKAALDMALRQIEKQFGKGSIMKLGEQAEQRVSTVSTGSLALDIALGVGGYPRGRVIEVYGPESSGKTTVALHAIAE
VQRNGGQAAFIDAEHALDPVYAEKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDMVVVDSVAALVPKAEIEGEMGDA
HVGLQARLMSQALRKLSGAINKSKTTAVFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAETLKQGNDMVGNKT
RIKVVKNKVAPPFKQAEVDIMYGEGISKQGEILDIGSNLEIVQKSGAWFSFEGERLGQGRENAKQFLKENPAMEAEIEGR
IRAHHNLDADKQVDEAAAGKETLLPDEE

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=369227 FJM75_RS01545 WP_098443418.1 304034..305080(+) (recA) [Bacillus sp. Cs-700]
GTGAGTGATCGTAAAGCTGCCTTAGATATGGCACTTAGACAAATAGAAAAACAATTCGGTAAAGGTTCAATCATGAAACT
CGGCGAACAAGCTGAGCAAAGAGTCTCTACGGTATCTACTGGTTCACTGGCTCTTGATATTGCTCTAGGTGTAGGAGGGT
ATCCAAGAGGTCGTGTCATCGAAGTTTACGGCCCGGAATCTTCTGGTAAAACAACCGTTGCTCTTCATGCTATTGCAGAA
GTTCAGCGTAACGGCGGTCAGGCCGCGTTTATCGATGCTGAGCACGCACTTGATCCGGTTTATGCAGAAAAGCTTGGTGT
TAACATCGATGAGCTATTGCTTTCTCAACCTGACACAGGAGAACAAGCCCTAGAAATTGCTGAAGCGCTCGTACGAAGTG
GAGCAGTTGATATGGTCGTTGTTGACTCCGTTGCTGCCCTTGTACCAAAGGCTGAAATCGAAGGTGAAATGGGAGATGCA
CACGTTGGTTTGCAGGCGCGTTTAATGTCTCAAGCGCTTCGTAAGCTTTCTGGTGCGATTAATAAATCCAAAACAACCGC
GGTCTTTATTAACCAGATTCGTGAAAAAGTTGGGGTTATGTTCGGAAATCCAGAAACAACTCCAGGCGGACGTGCACTGA
AATTCTATTCATCTGTTCGATTAGAAGTTCGTCGTGCTGAAACGCTGAAACAGGGTAATGACATGGTCGGTAACAAAACG
CGTATTAAAGTTGTAAAGAACAAGGTGGCTCCGCCGTTTAAACAGGCAGAAGTCGACATCATGTATGGGGAAGGTATTTC
CAAGCAAGGTGAGATCCTTGATATTGGGTCTAACCTTGAAATCGTTCAGAAGAGCGGCGCATGGTTCTCATTCGAAGGCG
AACGCCTTGGACAGGGTCGCGAAAATGCGAAGCAATTCTTGAAAGAAAACCCGGCAATGGAAGCTGAGATTGAAGGGCGT
ATTCGCGCTCATCATAATCTTGATGCCGATAAGCAAGTGGATGAAGCGGCTGCAGGTAAAGAAACGCTTCTTCCTGACGA
AGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

85.061

94.253

0.802
  recA Latilactobacillus sakei subsp. sakei 23K

70.605

99.713

0.704
  recA Streptococcus mitis NCTC 12261

67.246

99.138

0.667
  recA Streptococcus pneumoniae TIGR4

67.751

97.126

0.658
  recA Streptococcus pneumoniae D39

67.751

97.126

0.658
  recA Streptococcus pneumoniae R6

67.751

97.126

0.658
  recA Streptococcus pneumoniae Rx1

67.751

97.126

0.658
  recA Streptococcus mitis SK321

69.091

94.828

0.655
  recA Streptococcus mutans UA159

66.472

98.563

0.655
  recA Lactococcus lactis subsp. cremoris KW2

67.262

96.552

0.649
  recA Streptococcus pyogenes NZ131

69.444

93.103

0.647
  recA Neisseria gonorrhoeae MS11

66.364

94.828

0.629
  recA Neisseria gonorrhoeae strain FA1090

66.364

94.828

0.629
  recA Neisseria gonorrhoeae MS11

66.364

94.828

0.629
  recA Acinetobacter baylyi ADP1

60.933

98.563

0.601
  recA Pseudomonas stutzeri DSM 10701

64.486

92.241

0.595
  recA Ralstonia pseudosolanacearum GMI1000

66.774

89.08

0.595
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.375

91.954

0.592
  recA Vibrio cholerae strain A1552

64.375

91.954

0.592
  recA Glaesserella parasuis strain SC1401

63.95

91.667

0.586
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.24

92.241

0.583
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.963

93.678

0.58
  recA Acinetobacter baumannii D1279779

62.813

91.954

0.578
  recA Helicobacter pylori 26695

62.617

92.241

0.578
  recA Helicobacter pylori strain NCTC11637

62.617

92.241

0.578
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.18

92.529

0.566

Multiple sequence alignment