Detailed information    

insolico Bioinformatically predicted

Overview


Name   cinA   Type   Machinery gene
Locus tag   FJM75_RS01535 Genome accession   NZ_CP041063
Coordinates   301038..302267 (+) Length   409 a.a.
NCBI ID   WP_165995423.1    Uniprot ID   -
Organism   Bacillus sp. Cs-700     
Function   unknown (predicted from homology)   
Unclear

Genomic Context


Location: 296038..307267
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FJM75_RS01510 - 297167..297877 (+) 711 WP_165995419.1 SDR family oxidoreductase -
  FJM75_RS01515 - 297947..298198 (+) 252 WP_098443412.1 DUF3243 domain-containing protein -
  FJM75_RS01520 - 298366..299148 (+) 783 WP_098443413.1 YmfK family protein -
  FJM75_RS01525 - 299166..300113 (+) 948 WP_165995421.1 RodZ domain-containing protein -
  FJM75_RS01530 pgsA 300275..300853 (+) 579 WP_098443415.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  FJM75_RS01535 cinA 301038..302267 (+) 1230 WP_165995423.1 competence/damage-inducible protein A Machinery gene
  FJM75_RS01540 - 302280..303848 (+) 1569 WP_165995425.1 DEAD/DEAH box helicase -
  FJM75_RS01545 recA 304034..305080 (+) 1047 WP_098443418.1 recombinase RecA Machinery gene
  FJM75_RS01550 rny 305458..307020 (+) 1563 WP_098443419.1 ribonuclease Y -

Sequence


Protein


Download         Length: 409 a.a.        Molecular weight: 44780.80 Da        Isoelectric Point: 4.8715

>NTDB_id=369226 FJM75_RS01535 WP_165995423.1 301038..302267(+) (cinA) [Bacillus sp. Cs-700]
MNAEIIGIGSELLLGQIANTNAQFISQRLADLGINVFYHTVVGDNNERLKQAIEVAQTRSDLLVFTGGLGPTKDDLTKET
IAETLNKQLVYNEEAMKTIQAYYDKTGAPMSENNRKQALVLEGATVLRNDNGMAPGMALTENNHTYMLFPGPPKELYPMF
TNYAEPYLLGQLKQGDTIVSRVLRFFGIGESRLETELEDLIDQQTNPTIAPLAGEWEVTLRLTAKADSKEEANKLIDETE
KKIHARVGTFLYGYGETSLPKEVFSMLKDRNWSISTAESLTGGMFSQELTDLPGISSLFYGGVVCYSNEVKREIGVSKET
LEAYGAVSEECAIELARSVKAKYKTDVGISFTGVAGPDPSEGKEAGTVYIGVAAPSGEKVVALNLAGNRNAIRKRTVKHG
FNTLLKLER

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=369226 FJM75_RS01535 WP_165995423.1 301038..302267(+) (cinA) [Bacillus sp. Cs-700]
ATGAATGCTGAAATCATTGGAATCGGTTCAGAGTTATTACTCGGACAAATCGCAAACACGAACGCACAGTTCATCTCACA
ACGCCTAGCTGATCTTGGGATTAATGTTTTCTATCACACGGTTGTTGGCGATAATAATGAGCGTTTAAAACAAGCAATTG
AAGTCGCTCAGACGCGCTCAGACTTACTCGTTTTCACAGGTGGGCTTGGCCCGACGAAAGATGATCTTACGAAAGAAACA
ATCGCAGAAACTCTTAATAAACAGCTTGTTTATAACGAAGAGGCGATGAAAACGATTCAAGCTTATTATGACAAAACAGG
TGCTCCTATGTCGGAAAATAATCGTAAACAGGCACTAGTCCTAGAAGGTGCTACCGTTCTTCGAAATGATAATGGCATGG
CTCCCGGTATGGCGCTTACGGAGAACAACCACACGTACATGCTTTTCCCAGGCCCTCCGAAAGAACTTTACCCGATGTTT
ACAAACTATGCAGAGCCCTATTTACTTGGCCAGCTGAAGCAGGGAGATACGATTGTCTCACGTGTTCTTCGGTTTTTTGG
TATTGGAGAATCGAGGCTTGAAACAGAACTTGAAGACTTAATTGATCAGCAAACGAACCCTACAATTGCGCCGCTTGCAG
GAGAGTGGGAAGTGACGCTTCGTTTAACCGCAAAAGCTGACTCAAAAGAAGAAGCAAACAAGTTGATTGATGAAACTGAA
AAGAAAATCCATGCACGCGTTGGAACTTTTTTGTATGGGTATGGAGAGACATCACTTCCAAAAGAAGTCTTTTCAATGCT
AAAGGATCGGAACTGGTCGATCTCAACAGCAGAGAGTCTAACAGGCGGGATGTTTAGTCAGGAGTTAACAGATCTCCCTG
GAATATCATCACTTTTCTACGGTGGGGTTGTGTGTTACTCTAACGAAGTAAAGCGAGAGATCGGCGTATCAAAAGAGACA
CTGGAAGCATACGGTGCCGTAAGTGAAGAATGTGCGATTGAACTCGCTAGAAGCGTAAAAGCGAAATATAAAACAGACGT
CGGCATTAGTTTTACAGGCGTTGCAGGCCCTGATCCTAGTGAAGGGAAAGAGGCTGGCACCGTTTATATCGGCGTGGCCG
CACCATCTGGTGAAAAAGTGGTTGCCCTGAATCTTGCTGGGAACCGCAATGCGATTCGCAAACGTACTGTGAAACATGGA
TTTAATACATTATTGAAGTTAGAAAGGTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

60.345

99.267

0.599

  cinA Streptococcus mitis SK321

47.002

100

0.479

  cinA Streptococcus mitis NCTC 12261

46.523

100

0.474

  cinA Streptococcus pneumoniae TIGR4

46.283

100

0.472

  cinA Streptococcus pneumoniae Rx1

46.043

100

0.469

  cinA Streptococcus pneumoniae R6

46.043

100

0.469

  cinA Streptococcus pneumoniae D39

45.803

100

0.467

  cinA Streptococcus mutans UA159

44.853

99.756

0.447

  cinA Streptococcus suis isolate S10

41.176

95.599

0.394


Multiple sequence alignment