Detailed information    

insolico Bioinformatically predicted

Overview


Name   cinA   Type   Machinery gene
Locus tag   SAA6159_RS05995 Genome accession   NC_017338
Coordinates   1266898..1268049 (+) Length   383 a.a.
NCBI ID   WP_000020359.1    Uniprot ID   -
Organism   Staphylococcus aureus subsp. aureus JKD6159     
Function   unknown (predicted from homology)   
Unclear

Genomic Context


Location: 1261898..1273049
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAA6159_RS05970 (SAA6159_01134) yfmH 1262580..1263866 (+) 1287 WP_000664769.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  SAA6159_RS05975 (SAA6159_01135) ymfI 1263866..1264570 (+) 705 WP_000646230.1 elongation factor P 5-aminopentanone reductase -
  SAA6159_RS05980 (SAA6159_01136) - 1264675..1265502 (+) 828 WP_000214890.1 YmfK family protein -
  SAA6159_RS05985 (SAA6159_01137) - 1265521..1265913 (+) 393 WP_000859443.1 RodZ family helix-turn-helix domain-containing protein -
  SAA6159_RS05990 (SAA6159_01138) pgsA 1265947..1266525 (+) 579 WP_001025093.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  SAA6159_RS05995 (SAA6159_01139) cinA 1266898..1268049 (+) 1152 WP_000020359.1 CinA family nicotinamide mononucleotide deamidase-related protein Machinery gene
  SAA6159_RS06000 (SAA6159_01140) recA 1268214..1269257 (+) 1044 WP_000368164.1 recombinase RecA -
  SAA6159_RS06005 (SAA6159_01141) rny 1269611..1271170 (+) 1560 WP_001050913.1 ribonuclease Y -
  SAA6159_RS06010 (SAA6159_01142) - 1271468..1271683 (-) 216 WP_000026308.1 hypothetical protein -
  SAA6159_RS06015 (SAA6159_01143) - 1271857..1272654 (+) 798 WP_001222105.1 TIGR00282 family metallophosphoesterase -

Sequence


Protein


Download         Length: 383 a.a.        Molecular weight: 43205.52 Da        Isoelectric Point: 6.3213

>NTDB_id=36828 SAA6159_RS05995 WP_000020359.1 1266898..1268049(+) (cinA) [Staphylococcus aureus subsp. aureus JKD6159]
MSIAIIAVGSELLLGQIANTNGQFLSKVFNEIGQNVLEHKVIGDNKKRLESSVRHALEKYDTVILTGGLGPTKDDLTKHT
VAQIVGKDLVIDEPSLKYIESYFEEQGQEMTPNNKQQALVIEGSTVLSNHHGMAPGMMVNFENKQIILLPGPPKEMQPMV
KNELLSHFINHNRIIHSELLRFAGIGESKVETVLIDLIDKQTNPTIAPLAGSHEVYIRLTANADSKEQAQSLIQPVKQEI
LDRIGEYYYGSDDTLIEQAVIKKIHEPFVIYDGITNGALYHRLKEVDLNDVLKGMINHNENFVDINKPIEQQLKDAVQFV
NKLFNVSSAIILLEYDGVVHIGYDNNLEFKTEKFKMSKSRNLLKNRSQNYALIRLLNWLRTTN

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=36828 SAA6159_RS05995 WP_000020359.1 1266898..1268049(+) (cinA) [Staphylococcus aureus subsp. aureus JKD6159]
ATGTCAATTGCCATTATTGCTGTAGGCTCAGAACTATTGCTAGGTCAAATCGCTAATACCAACGGACAATTTCTATCTAA
AGTATTTAATGAAATTGGACAAAATGTATTAGAACATAAAGTTATTGGAGATAATAAAAAACGTTTAGAATCAAGTGTAC
GTCATGCGTTAGAAAAATATGATACTGTTATTTTAACAGGTGGCTTAGGTCCTACGAAAGATGACTTAACGAAGCATACA
GTGGCCCAGATTGTTGGTAAAGATTTAGTTATTGATGAGCCTTCTTTAAAATATATTGAAAGCTATTTTGAGGAACAAGG
ACAAGAAATGACACCTAATAATAAACAACAGGCTTTAGTAATTGAAGGTTCAACTGTATTATCAAATCATCATGGCATGG
CTCCAGGAATGATGGTGAATTTTGAAAACAAACAAATTATTTTATTACCAGGTCCACCGAAAGAAATGCAACCAATGGTA
AAAAATGAATTGTTGTCACATTTTATAAACCATAATCGAATTATACACTCTGAACTATTAAGATTTGCGGGAATAGGTGA
ATCTAAAGTAGAAACAGTATTAATAGATCTTATCGATAAACAGACTAATCCTACGATTGCGCCTTTGGCAGGAAGTCATG
AAGTATATATTAGATTGACTGCAAATGCCGACTCAAAAGAACAAGCACAATCATTGATTCAACCCGTTAAGCAAGAAATT
CTTGATCGTATTGGAGAATATTATTATGGTTCAGATGACACATTAATTGAGCAAGCTGTAATAAAGAAAATTCATGAACC
TTTTGTAATATATGATGGTATTACTAATGGTGCTTTATATCATCGATTGAAAGAAGTGGATTTAAACGATGTTCTAAAGG
GTATGATTAATCACAATGAAAACTTTGTTGATATTAATAAACCTATTGAGCAGCAATTAAAAGATGCAGTGCAATTTGTT
AATAAATTATTTAATGTGTCATCAGCAATTATTCTATTAGAGTATGATGGTGTAGTCCATATAGGCTATGATAATAACTT
AGAATTTAAAACTGAGAAATTTAAAATGTCTAAATCTAGAAATTTATTAAAGAACAGAAGTCAAAATTATGCGCTTATAA
GATTATTAAATTGGCTTAGAACAACAAATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

40.146

100

0.431


Multiple sequence alignment