Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   FEE42_RS06630 Genome accession   NZ_CP040863
Coordinates   1311515..1312624 (+) Length   369 a.a.
NCBI ID   WP_059365986.1    Uniprot ID   A0A9X8YYD0
Organism   Rodentibacter caecimuris strain G1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1306515..1317624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FEE42_RS06610 (FEE42_06590) hslU 1307082..1308416 (-) 1335 WP_059365981.1 HslU--HslV peptidase ATPase subunit -
  FEE42_RS06615 (FEE42_06595) hslV 1308427..1308954 (-) 528 WP_059365982.1 ATP-dependent protease subunit HslV -
  FEE42_RS06620 (FEE42_06600) rmuC 1309134..1310741 (+) 1608 WP_059365984.1 DNA recombination protein RmuC -
  FEE42_RS06625 (FEE42_06605) - 1310821..1311372 (+) 552 WP_059365985.1 TIGR00645 family protein -
  FEE42_RS06630 (FEE42_06610) recA 1311515..1312624 (+) 1110 WP_059365986.1 recombinase RecA Machinery gene
  FEE42_RS06635 (FEE42_06615) recX 1312693..1313151 (+) 459 WP_059365987.1 recombination regulator RecX -
  FEE42_RS06640 (FEE42_06620) phoR 1313184..1314479 (-) 1296 WP_135968990.1 phosphate regulon sensor histidine kinase PhoR -
  FEE42_RS06645 (FEE42_06625) phoB 1314479..1315174 (-) 696 WP_077665374.1 phosphate regulon transcriptional regulator PhoB -
  FEE42_RS06650 (FEE42_06630) pstB 1315225..1315983 (-) 759 WP_059365990.1 phosphate ABC transporter ATP-binding protein PstB -
  FEE42_RS06655 (FEE42_06635) pstA 1315990..1316841 (-) 852 WP_059365991.1 phosphate ABC transporter permease PstA -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 39585.30 Da        Isoelectric Point: 5.3501

>NTDB_id=367730 FEE42_RS06630 WP_059365986.1 1311515..1312624(+) (recA) [Rodentibacter caecimuris strain G1]
MASQDEKKKGKTTATTPATQEEKQKALAAALGQIEKQFGKGSIMKLGDNQKLDVESISTGSIGLDVALGIGGLPMGRIVE
IFGPESSGKTTLTLSVIAQAQKAGKTCAFIDAEHALDPIYAAKLGVDVKELLVSQPDNGEQALEICDALVRSGAVDVIIV
DSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTGQIKNANCLVIFINQIRMKIGVSFGNPETTTGGNALKFYASVRL
DIRRIGSVKEGENVIGNDTRVKVVKNKLAPPFRQVEFQILYGEGISKTGELIELGVTHKLVNKSGAWYSYDGEKIGQGKM
NAMKWLLDNPDKAQVLENKLRAELVANPDQGLVADTEQTDEKVSSEDEF

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=367730 FEE42_RS06630 WP_059365986.1 1311515..1312624(+) (recA) [Rodentibacter caecimuris strain G1]
ATGGCATCACAAGACGAAAAAAAGAAAGGAAAAACAACGGCTACAACACCTGCAACACAGGAAGAAAAACAAAAAGCCCT
TGCAGCAGCATTGGGGCAAATTGAAAAACAATTCGGTAAAGGCTCCATTATGAAGTTAGGGGATAATCAAAAACTTGATG
TGGAATCTATTTCTACCGGTTCTATCGGACTCGATGTTGCTTTAGGTATCGGTGGTTTACCTATGGGGCGTATCGTTGAA
ATCTTCGGCCCTGAATCTTCCGGTAAAACAACATTAACACTTTCAGTTATCGCTCAGGCACAAAAAGCGGGTAAAACCTG
TGCATTTATTGATGCCGAGCATGCTTTAGATCCTATTTATGCCGCTAAATTAGGTGTTGATGTCAAAGAATTATTAGTTT
CTCAGCCGGATAACGGCGAACAAGCTCTTGAAATTTGCGATGCTTTGGTACGTTCCGGAGCAGTTGATGTGATTATTGTT
GACTCCGTAGCGGCATTAACGCCAAAAGCCGAAATTGAGGGCGATATGGGCGATTCCCATATGGGGTTACAAGCGCGTTT
GATGTCGCAAGCCTTGCGTAAATTAACCGGACAAATTAAAAATGCAAATTGCTTGGTGATATTTATTAACCAAATTCGGA
TGAAAATCGGGGTATCTTTTGGGAATCCTGAAACCACAACCGGCGGTAATGCACTAAAATTTTATGCGTCGGTTCGCTTG
GATATTCGCCGTATAGGGTCTGTGAAAGAGGGTGAAAATGTTATTGGTAATGACACTAGAGTTAAAGTGGTTAAAAATAA
ATTAGCGCCTCCGTTCCGCCAAGTCGAATTCCAAATTCTTTATGGAGAAGGTATTTCTAAAACCGGGGAATTAATAGAGC
TTGGCGTTACACATAAATTAGTGAATAAATCCGGTGCTTGGTACTCTTACGACGGCGAGAAAATTGGTCAAGGTAAGATG
AATGCAATGAAATGGTTACTGGATAATCCTGACAAAGCACAAGTATTAGAAAACAAATTACGTGCCGAATTGGTTGCAAA
TCCTGATCAGGGTTTAGTCGCCGATACTGAACAAACCGATGAAAAAGTCAGTTCGGAAGATGAATTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(25-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Glaesserella parasuis strain SC1401

71.39

99.458

0.71
  recA Vibrio cholerae strain A1552

74.709

93.225

0.696
  recA Vibrio cholerae O1 biovar El Tor strain E7946

74.709

93.225

0.696
  recA Pseudomonas stutzeri DSM 10701

76.308

88.076

0.672
  recA Acinetobacter baylyi ADP1

69.501

92.412

0.642
  recA Acinetobacter baumannii D1279779

69.006

92.683

0.64
  recA Neisseria gonorrhoeae MS11

72.755

87.534

0.637
  recA Neisseria gonorrhoeae MS11

72.755

87.534

0.637
  recA Neisseria gonorrhoeae strain FA1090

72.755

87.534

0.637
  recA Ralstonia pseudosolanacearum GMI1000

70.732

88.889

0.629
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.682

92.954

0.583
  recA Helicobacter pylori 26695

61.404

92.683

0.569
  recA Helicobacter pylori strain NCTC11637

60.819

92.683

0.564
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.605

85.095

0.558
  recA Bacillus subtilis subsp. subtilis str. 168

63.75

86.721

0.553
  recA Streptococcus mutans UA159

55.464

99.187

0.55
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.76

90.244

0.539
  recA Lactococcus lactis subsp. cremoris KW2

54.902

96.748

0.531
  recA Latilactobacillus sakei subsp. sakei 23K

60.062

87.534

0.526
  recA Streptococcus pyogenes NZ131

56.725

92.683

0.526
  recA Streptococcus mitis SK321

59.021

88.618

0.523
  recA Streptococcus mitis NCTC 12261

59.021

88.618

0.523
  recA Streptococcus pneumoniae R6

58.716

88.618

0.52
  recA Streptococcus pneumoniae TIGR4

58.716

88.618

0.52
  recA Streptococcus pneumoniae D39

58.716

88.618

0.52
  recA Streptococcus pneumoniae Rx1

58.716

88.618

0.52

Multiple sequence alignment