Detailed information    

insolico Bioinformatically predicted

Overview


Name   recA   Type   Machinery gene
Locus tag   FDP16_RS00725 Genome accession   NZ_CP040798
Coordinates   133189..134337 (+) Length   382 a.a.
NCBI ID   WP_176798206.1    Uniprot ID   -
Organism   Streptococcus sanguinis strain CGMH058     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 128189..139337
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDP16_RS00705 (FDP16_00725) - 129870..130493 (+) 624 WP_060976494.1 ATP-binding cassette domain-containing protein -
  FDP16_RS00710 (FDP16_00730) - 130490..130981 (+) 492 WP_011837641.1 hypothetical protein -
  FDP16_RS00715 (FDP16_00735) - 131194..131604 (-) 411 WP_176798204.1 helix-turn-helix domain-containing protein -
  FDP16_RS00720 (FDP16_00745) cinA 131874..133130 (+) 1257 WP_176798205.1 competence/damage-inducible protein A Machinery gene
  FDP16_RS00725 (FDP16_00750) recA 133189..134337 (+) 1149 WP_176798206.1 recombinase RecA Machinery gene
  FDP16_RS00730 (FDP16_00755) spx 134423..134821 (+) 399 WP_176798207.1 transcriptional regulator Spx -
  FDP16_RS00735 (FDP16_00760) - 134957..135529 (+) 573 WP_176798208.1 SP0191 family lipoprotein -
  FDP16_RS00740 (FDP16_00765) - 135635..136177 (+) 543 WP_176798209.1 hypothetical protein -
  FDP16_RS00745 (FDP16_00770) - 136355..136621 (+) 267 WP_002894075.1 IreB family regulatory phosphoprotein -
  FDP16_RS00750 (FDP16_00775) ruvX 136621..137040 (+) 420 WP_002911439.1 Holliday junction resolvase RuvX -
  FDP16_RS00755 (FDP16_00780) - 137065..137376 (+) 312 WP_002894073.1 DUF1292 domain-containing protein -
  FDP16_RS00760 (FDP16_00785) - 137559..138791 (+) 1233 WP_176798210.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  FDP16_RS00765 (FDP16_00790) - 138849..139328 (+) 480 WP_176798211.1 SP_0198 family lipoprotein -

Sequence


Protein


Download         Length: 382 a.a.        Molecular weight: 41150.78 Da        Isoelectric Point: 4.7870

>NTDB_id=367194 FDP16_RS00725 WP_176798206.1 133189..134337(+) (recA) [Streptococcus sanguinis strain CGMH058]
MAKKQKKLDEISKKFGDERQKALDNALKNIEKDFGKGAIMRLGERAEQKVQVMSSGSLALDIALGAGGYPKGRIIEIYGP
ESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPSYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVA
ALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRG
NTQIKGTGDDKDTNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELIKIATDLDIIKKAGAWYSYNDEKIGQGSE
NAKKYLADHPEIFDEIDRQVRVRYGLIEGDDLAEAVGSKADSPVETMEEVTLDLDDAIEIEE

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=367194 FDP16_RS00725 WP_176798206.1 133189..134337(+) (recA) [Streptococcus sanguinis strain CGMH058]
ATGGCAAAGAAACAAAAAAAATTAGACGAAATCTCAAAGAAATTCGGCGATGAGCGTCAAAAAGCCTTGGATAATGCTCT
TAAAAACATTGAAAAGGATTTTGGTAAGGGAGCTATTATGCGTCTTGGCGAGCGGGCAGAGCAAAAGGTTCAAGTTATGA
GTTCTGGCTCTTTGGCCTTGGATATTGCCCTTGGTGCTGGTGGTTACCCTAAGGGACGGATTATTGAAATCTATGGTCCG
GAGTCTTCTGGTAAGACAACCGTTGCTCTTCACGCTGTTGCTCAAGCGCAAAAAGAAGGTGGTATCGCAGCCTTTATCGA
TGCTGAGCATGCTTTGGATCCGTCATACGCGGCTGCTCTGGGTGTCAATATTGATGAGTTGCTGCTGTCTCAACCTGATT
CTGGAGAACAGGGGCTGGAAATTGCCGGTAAGCTGATTGACTCAGGTGCGGTGGATTTGGTGGTTGTGGACTCAGTTGCA
GCTCTGGTACCACGTGCGGAAATCGATGGCGATATCGGTGACAGCCATGTCGGCTTGCAGGCTCGGATGATGAGTCAGGC
GATGCGCAAACTGTCAGCTTCTATCAACAAGACTAAGACAATTGCGATTTTCATTAACCAGCTGCGTGAAAAAGTTGGCG
TTATGTTTGGTAATCCTGAAACAACACCAGGTGGCCGTGCACTGAAGTTCTATGCTTCTGTCCGTTTGGATGTTCGCGGT
AATACTCAAATCAAAGGTACTGGTGATGACAAGGATACCAATGTTGGTAAAGAAACCAAGATCAAGGTCGTTAAAAATAA
GGTAGCTCCGCCATTCAAAGAAGCCTTCGTGGAAATCATGTACGGAGAAGGTATTTCTAAGACAGGTGAGTTGATTAAGA
TTGCGACTGATTTGGATATCATCAAGAAAGCTGGTGCTTGGTACTCCTACAATGATGAAAAAATCGGTCAAGGTTCAGAA
AATGCTAAGAAGTACTTGGCTGATCATCCAGAAATCTTTGACGAAATTGACCGTCAGGTTCGTGTACGCTATGGTTTGAT
TGAAGGCGATGACTTAGCAGAAGCAGTTGGCAGCAAAGCTGACAGCCCTGTAGAAACGATGGAAGAAGTGACTCTTGATT
TGGACGATGCCATCGAAATTGAAGAGTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mitis NCTC 12261

90.026

99.738

0.898

  recA Streptococcus pneumoniae Rx1

88.312

100

0.89

  recA Streptococcus pneumoniae D39

88.312

100

0.89

  recA Streptococcus pneumoniae R6

88.312

100

0.89

  recA Streptococcus pneumoniae TIGR4

88.312

100

0.89

  recA Streptococcus mitis SK321

89.239

99.738

0.89

  recA Streptococcus mutans UA159

86.162

100

0.864

  recA Streptococcus pyogenes NZ131

86.126

100

0.861

  recA Lactococcus lactis subsp. cremoris KW2

76.989

92.147

0.709

  recA Latilactobacillus sakei subsp. sakei 23K

66.667

95.026

0.634

  recA Bacillus subtilis subsp. subtilis str. 168

70.517

86.126

0.607

  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

64.396

84.555

0.545

  recA Neisseria gonorrhoeae MS11

61.934

86.649

0.537

  recA Neisseria gonorrhoeae MS11

61.934

86.649

0.537

  recA Neisseria gonorrhoeae strain FA1090

61.934

86.649

0.537

  recA Glaesserella parasuis strain SC1401

60.294

89.005

0.537

  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.08

85.602

0.531

  recA Vibrio cholerae strain A1552

62.462

85.079

0.531

  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.462

85.079

0.531

  recA Acinetobacter baumannii D1279779

61.846

85.079

0.526

  recA Acinetobacter baylyi ADP1

61.231

85.079

0.521

  recA Helicobacter pylori strain NCTC11637

56.091

92.408

0.518

  recA Helicobacter pylori 26695

56.091

92.408

0.518

  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.982

87.435

0.516

  recA Pseudomonas stutzeri DSM 10701

58.716

85.602

0.503

  recA Ralstonia pseudosolanacearum GMI1000

59.621

82.984

0.495


Multiple sequence alignment