Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   FDP16_RS00720 Genome accession   NZ_CP040798
Coordinates   131874..133130 (+) Length   418 a.a.
NCBI ID   WP_176798205.1    Uniprot ID   -
Organism   Streptococcus sanguinis strain CGMH058     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 126874..138130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDP16_RS00695 (FDP16_00715) - 127482..127820 (+) 339 WP_002894090.1 hypothetical protein -
  FDP16_RS00700 (FDP16_00720) - 127888..129870 (+) 1983 WP_176798203.1 ABC transporter permease -
  FDP16_RS00705 (FDP16_00725) - 129870..130493 (+) 624 WP_060976494.1 ATP-binding cassette domain-containing protein -
  FDP16_RS00710 (FDP16_00730) - 130490..130981 (+) 492 WP_011837641.1 hypothetical protein -
  FDP16_RS00715 (FDP16_00735) - 131194..131604 (-) 411 WP_176798204.1 helix-turn-helix domain-containing protein -
  FDP16_RS00720 (FDP16_00745) cinA 131874..133130 (+) 1257 WP_176798205.1 competence/damage-inducible protein A Machinery gene
  FDP16_RS00725 (FDP16_00750) recA 133189..134337 (+) 1149 WP_176798206.1 recombinase RecA Machinery gene
  FDP16_RS00730 (FDP16_00755) spx 134423..134821 (+) 399 WP_176798207.1 transcriptional regulator Spx -
  FDP16_RS00735 (FDP16_00760) - 134957..135529 (+) 573 WP_176798208.1 SP0191 family lipoprotein -
  FDP16_RS00740 (FDP16_00765) - 135635..136177 (+) 543 WP_176798209.1 hypothetical protein -
  FDP16_RS00745 (FDP16_00770) - 136355..136621 (+) 267 WP_002894075.1 IreB family regulatory phosphoprotein -
  FDP16_RS00750 (FDP16_00775) ruvX 136621..137040 (+) 420 WP_002911439.1 Holliday junction resolvase RuvX -
  FDP16_RS00755 (FDP16_00780) - 137065..137376 (+) 312 WP_002894073.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 44876.02 Da        Isoelectric Point: 4.7124

>NTDB_id=367193 FDP16_RS00720 WP_176798205.1 131874..133130(+) (cinA) [Streptococcus sanguinis strain CGMH058]
MKAEIIAVGTEILTGQIVNTNAQFLSEKLASLGIDVYFQTAVGDNENRLLSVLEIAQGRSNLIILTGGLGPTEDDLTKQT
LAKFLERELIFDPQAVEKLDRFFASRPDYARTPNNERQAQLVEGSTLLSNATGLAVGGLLEADGVTYVVLPGPPSELKPM
VNNELVPLLSTGQKLYSRVLRFFGIGESQLVTILSEMIEQQSDPTIAPYAKTGEVTLRLSTKALSQAEADTKFETVEKEI
LAHKTFEGHSLSEIFYGYGDDNSLAQVAFELLKSQGKTISAAESLTAGLFQATLADFAGASAIFSGGFVTYSMEEKSRML
DIPLGDLEKHGVVSAFTAGKMAEQARKLTESDLAVSLTGVAGPDSLEDHPAGTVFIGLASASGTETIKVNIAGRSRRDVR
KIAVLHAFNLVRKTLLNS

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=367193 FDP16_RS00720 WP_176798205.1 131874..133130(+) (cinA) [Streptococcus sanguinis strain CGMH058]
ATGAAAGCAGAAATTATTGCTGTGGGCACCGAGATTCTGACAGGTCAGATTGTCAATACCAATGCCCAATTTTTATCTGA
AAAACTGGCGAGTCTGGGGATTGATGTCTATTTTCAGACAGCAGTAGGGGACAATGAAAATCGTCTCCTCTCTGTTTTGG
AAATTGCTCAAGGACGCAGTAATCTGATTATCCTAACAGGAGGCTTGGGGCCAACAGAGGATGATTTGACCAAGCAAACC
TTGGCTAAATTCTTAGAGCGCGAGCTCATTTTTGATCCTCAGGCTGTGGAAAAGCTGGATCGCTTTTTTGCTAGCCGGCC
AGATTATGCTCGAACGCCCAATAATGAGCGTCAGGCCCAGCTGGTCGAAGGCTCAACTCTGTTGTCAAATGCGACCGGCT
TAGCTGTCGGAGGATTGTTAGAAGCAGACGGAGTGACCTATGTAGTCCTGCCTGGCCCGCCTAGTGAGCTCAAGCCCATG
GTCAATAACGAGCTGGTTCCCCTCTTATCCACAGGCCAGAAATTGTATTCACGGGTGCTGCGTTTCTTTGGTATCGGCGA
GAGTCAGCTAGTGACTATTTTGTCAGAGATGATTGAGCAGCAAAGTGACCCCACCATTGCTCCTTATGCAAAGACAGGGG
AAGTTACCCTGCGACTGTCCACCAAGGCTCTGAGTCAGGCAGAAGCCGACACCAAGTTTGAGACTGTGGAAAAGGAAATT
TTGGCACACAAGACTTTTGAGGGACATTCACTGTCAGAGATTTTCTATGGTTATGGGGATGACAATTCCTTGGCACAGGT
GGCTTTTGAGTTGCTGAAGAGTCAAGGGAAGACGATTTCGGCGGCGGAGAGTCTGACAGCAGGCCTCTTTCAAGCGACTT
TGGCAGATTTTGCTGGAGCTTCAGCTATTTTTTCAGGTGGCTTTGTCACCTACAGCATGGAGGAAAAGAGCCGGATGCTG
GATATCCCGTTGGGAGACCTGGAGAAGCACGGTGTCGTTTCAGCTTTTACGGCTGGGAAAATGGCAGAGCAGGCTAGAAA
GCTGACCGAAAGCGACTTAGCTGTCAGTCTGACAGGTGTGGCTGGCCCAGATTCGCTGGAAGACCATCCAGCAGGGACTG
TTTTTATCGGCTTAGCTAGTGCTTCAGGAACGGAAACTATTAAGGTCAATATTGCTGGACGAAGTCGGCGTGATGTGCGG
AAAATTGCAGTTCTGCACGCCTTCAACCTAGTACGAAAAACTTTATTAAATAGCTGA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(262-415)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(177-240)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

77.698

99.761

0.775
  cinA Streptococcus mitis NCTC 12261

77.218

99.761

0.77
  cinA Streptococcus pneumoniae TIGR4

76.499

99.761

0.763
  cinA Streptococcus pneumoniae Rx1

76.499

99.761

0.763
  cinA Streptococcus pneumoniae R6

76.499

99.761

0.763
  cinA Streptococcus pneumoniae D39

76.259

99.761

0.761
  cinA Streptococcus mutans UA159

74.88

100

0.749
  cinA Streptococcus suis isolate S10

55.048

99.522

0.548
  cinA Bacillus subtilis subsp. subtilis str. 168

46.411

100

0.464

Multiple sequence alignment