Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   BPGQ101_RS08900 Genome accession   NZ_CP040514
Coordinates   1724301..1725344 (+) Length   347 a.a.
NCBI ID   WP_138278534.1    Uniprot ID   -
Organism   Bacillus altitudinis strain GQYP101     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1719301..1730344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BPGQ101_RS08875 (BPGQ101_08880) - 1720086..1720343 (+) 258 WP_003211590.1 DUF3243 domain-containing protein -
  BPGQ101_RS08880 (BPGQ101_08885) - 1720475..1721266 (+) 792 WP_003211480.1 DUF3388 domain-containing protein -
  BPGQ101_RS08885 (BPGQ101_08890) - 1721290..1722201 (+) 912 WP_138278532.1 helix-turn-helix domain-containing protein -
  BPGQ101_RS08890 (BPGQ101_08895) pgsA 1722275..1722856 (+) 582 WP_008344688.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  BPGQ101_RS08895 (BPGQ101_08900) cinA 1722873..1724123 (+) 1251 WP_138278533.1 competence/damage-inducible protein A Machinery gene
  BPGQ101_RS08900 (BPGQ101_08905) recA 1724301..1725344 (+) 1044 WP_138278534.1 recombinase RecA Machinery gene
  BPGQ101_RS08905 (BPGQ101_08910) rny 1725645..1727207 (+) 1563 WP_003211958.1 ribonuclease Y -
  BPGQ101_RS08910 (BPGQ101_08915) - 1727297..1728091 (+) 795 WP_019744184.1 TIGR00282 family metallophosphoesterase -
  BPGQ101_RS08915 (BPGQ101_08920) spoVS 1728294..1728554 (+) 261 WP_003211281.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37848.96 Da        Isoelectric Point: 4.7701

>NTDB_id=364816 BPGQ101_RS08900 WP_138278534.1 1724301..1725344(+) (recA) [Bacillus altitudinis strain GQYP101]
MSDRQAALDMALKQIEKQFGRGSIMKLGEQTDTRISTVPSGSLALDTALGIGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQQQGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIVVIDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDIMGNKT
RIKVVKNKVAPPFRIAEVDIMYGEGISKEGEIIDLGSELDIVQKSGAWYSYQEERLGQGRENAKQFLKENKDILLMIQEQ
IREHYGLDTNGVKSTDEEGQEELELND

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=364816 BPGQ101_RS08900 WP_138278534.1 1724301..1725344(+) (recA) [Bacillus altitudinis strain GQYP101]
ATGAGTGATCGTCAAGCAGCCTTAGATATGGCTCTTAAACAAATAGAAAAACAGTTTGGTAGAGGCTCTATTATGAAACT
AGGAGAGCAAACAGATACACGTATTTCAACAGTACCTAGTGGTTCGTTAGCACTTGATACTGCGCTTGGAATAGGTGGAT
ACCCTCGCGGCCGTATTATTGAAGTATATGGTCCAGAGAGTTCTGGTAAAACGACAGTAGCACTTCATGCGATTGCTGAG
GTTCAGCAGCAGGGAGGACAAGCTGCATTTATCGATGCGGAGCATGCGCTAGATCCAGTTTACGCTCAAAAATTAGGTGT
CAACATTGATGAGTTATTGCTTTCTCAGCCGGATACAGGAGAACAAGCACTTGAAATTGCAGAAGCACTTGTTCGTAGTG
GTGCAGTTGATATTGTTGTCATTGACTCAGTAGCTGCTCTTGTACCAAAAGCAGAGATCGAAGGAGACATGGGAGATTCA
CACGTTGGTCTTCAAGCACGTTTGATGTCTCAAGCACTTCGTAAACTATCTGGTGCTATCAACAAATCAAAAACAATTGC
GATCTTTATTAACCAAATTCGTGAAAAAGTAGGGGTTATGTTTGGTAATCCTGAAACAACGCCTGGTGGACGTGCACTTA
AGTTCTATTCATCTGTTCGTTTAGAAGTACGCCGTGCTGAACAGTTGAAACAAGGGAACGACATCATGGGGAACAAAACG
AGAATTAAAGTTGTGAAAAACAAAGTGGCACCACCATTCCGTATTGCCGAAGTAGACATTATGTACGGTGAAGGTATCTC
GAAAGAGGGAGAAATCATCGACCTTGGAAGCGAACTAGATATCGTACAAAAGAGCGGGGCTTGGTATTCTTATCAAGAGG
AACGTCTTGGACAAGGACGTGAAAATGCGAAGCAATTCCTAAAAGAGAATAAGGACATTCTTCTTATGATTCAGGAGCAG
ATCAGGGAGCACTATGGTTTGGATACAAACGGAGTGAAATCAACTGACGAAGAAGGACAAGAAGAATTGGAATTGAATGA
CTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

96.386

95.677

0.922
  recA Latilactobacillus sakei subsp. sakei 23K

74.769

93.66

0.7
  recA Streptococcus mutans UA159

64.722

100

0.671
  recA Streptococcus pneumoniae D39

66.763

99.712

0.666
  recA Streptococcus pneumoniae Rx1

66.763

99.712

0.666
  recA Streptococcus pneumoniae R6

66.763

99.712

0.666
  recA Streptococcus pneumoniae TIGR4

66.763

99.712

0.666
  recA Streptococcus mitis NCTC 12261

68.788

95.101

0.654
  recA Streptococcus mitis SK321

68.485

95.101

0.651
  recA Streptococcus pyogenes NZ131

67.683

94.524

0.64
  recA Lactococcus lactis subsp. cremoris KW2

66.061

95.101

0.628
  recA Neisseria gonorrhoeae strain FA1090

63.501

97.118

0.617
  recA Neisseria gonorrhoeae MS11

63.501

97.118

0.617
  recA Neisseria gonorrhoeae MS11

63.501

97.118

0.617
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.353

97.983

0.611
  recA Ralstonia pseudosolanacearum GMI1000

64.024

94.524

0.605
  recA Helicobacter pylori strain NCTC11637

64.308

93.66

0.602
  recA Helicobacter pylori 26695

64.308

93.66

0.602
  recA Acinetobacter baumannii D1279779

60.465

99.135

0.599
  recA Glaesserella parasuis strain SC1401

61.176

97.983

0.599
  recA Acinetobacter baylyi ADP1

60.058

98.847

0.594
  recA Vibrio cholerae strain A1552

63.863

92.507

0.591
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.863

92.507

0.591
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.08

94.236

0.585
  recA Pseudomonas stutzeri DSM 10701

60.961

95.965

0.585
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.752

93.084

0.556

Multiple sequence alignment